barSeed - Barley Seed Development Database

Probe CUST_22756_PI390587928

Source Contig U35_15129

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22756_PI390587928	Hv_44K_v2	CACGATACTTTTCCATCTTTGTGTTCGGATATTGTTGTCTTTCGGCCAATAATTTTAATG	1921	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.335	1.433	1.133	0.817	0.292	0.345
Raw	21967.867	36147.067	25674.400	28903.097	3642.247	4712.757

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4012.3	1918	2e-24	1718 - 1777	100	60 / 60	plus	ABC02823 ABC44733
MLOC	MLOC_4012.1	1910	2e-24	1789 - 1848	100	60 / 60	plus	ABC02823 ABC44733
JLOC1	JLOC1_2435.1	1785	8e-25	1575 - 1634	100	60 / 60	plus
Harvest21	ABC02823	2091	3e-25	1922 - 1981	100	60 / 60	plus	ABC02823
Harvest35	U35_15129	2115	3e-25	1922 - 1981	100	60 / 60	plus

Contig Sequence (2115 bp)

>U35_15129 2115 Hv_44K_v2
CAGCTTCCTCCACGCCCGATCCATCCGACTGCAACAAACCCTAGGCAAAGCCAGATCTCC
ACCTCCTCCGCCGCCGGAGAGGCCGTCCACCAGATCTCCCCGATGGCGTTCCGCCGACTC
CTCTCGGCCGCAGTGCGCCGCCGCTCCGCCGCGGCGGCCGCTGCGGCCGGGAACGCGCGC
GAGGCCTCCACGGCCGTCGCCGCGGCCCCCGGCGCCATCGCCCCCGACGCGCCCGCCGTC
CGCGCCCCCATGATGCCGTACGACCGGATCGCCGAGGCCGTCAACGCGCGCGTCCGCCGC
CTCGAGCACCCGGACCCCCGCTTCCTCCGCTACGCCAGCCCCGTGCCCGCGCACGTCGAC
CACACGGCCATCCTCGACGCGCCGGAGACCAAGGTCACCACGCTCGACAACGGCCTGCGC
GTCGCCACCGAGTCCTCGCTCTCCTCCCGCACCGCCACCGTCGGCGTCTGGATCGACGCC
GGGAGCAGGTACGAGACGGAGGAGGCGGCCGGGGTCGCCCATTTCGTCGAGCACATGCTC
TTCAAGGGCACGGGGACGCGCAGCGCCGCGCAGCTCGAGCAGGAGATCGAGGACATGGGC
GGCCACCTCAACGCCTACACCTCGCGGGAGCAGACCACCTACTACGCCAAGGTGCTCGAC
AAGGACGTGCCACGCGCGATGAATGTCCTCGCCGACATTTTGCAGCACTCCAAGCTCCAA
GACGACCGCATTGAACGTGAGCGGGGCGTAATTCTCCGAGAGATGGAGGAGGTTCAGGGA
CAGTCTGAGGAAGTTATATTCGATCATCTCCATGCAACTGCATTCCAGTATACTTCTCTT
GGCAGGCCAATCTTGGGTTCTGCTGATAACGTCAAGTCTATCACCAAAAAGGATCTCGTA
GACTACATTCAAAATCATTACACGGCTTCTAGAATGGTTATTACTGCTGCTGGTGCTGTT
AAGCATGATGATATTGTACAACAGGCAAAAGAGCTGTTCAAAACGCTGCCAACTGACCCT
ACAACAACCAACATGTTGGTTGCTAAGCAGCCAGCCATTTTTACTGGTTCTGAGGTACGA
ATCATTGATGATGACATGCCCCTTGCTCAATTTGCTGTTGCCTTCAATGGAGCATCCTGG
ACAGATCCCGATTCTATTGCATTAATGGTTATGCAAACCATGCTTGGTTCCTGGAACAAG
AGTGCTGGAGGAGGGAAGCACATGGGTTCGGAGCTTGTACAGAGAGTAGCAATCAATGAC
ATAGCTGAGAGTATAATGGCATTCAACACAAACTATAAGGACACTGGCCTGTTTGGTGTG
TATGCTGTCGCTAAGCCTGATTGCTTGGATGATTTGGCTTTTGCAATTATGCAAGAGATG
AGCAAATTATCATACAGGGTTACCGAAGAGGATGTTATTCGTGCACGTAATCAGCTGAAA
TCGTCCATCCAACTACACCTTGATGGCTCCACTGCTGTTGTTGAGGATATTGGACGTCAG
CAACTCATCTATGGCCGTAGAATTCCTATTCCCGAGCTTTTTGCGAGAATAGATGCAGTT
GATCCCAGCACTATCAGGCGTGTTGCAAACCGCTTCATCTTTGACCAGGATATTGCCATC
GCTGCCATGGGACCAATTAAGACTCTTCCAGACTACAACTGGTTCAGACGCAGGACCTAC
ATGCTCCGTTACTAGATTCAACCAGCAGTGTACCATGTTTACAGTCTGCAAAGGCAAGAT
GATTGCTTGTTTTGGCATCAGTATATTATAAGGCCACATCCACGCACATATTATGTGCCG
AAGTGGAGGAATTTTTTGAGTCTTCGTTTTCCTTGCCCCTGTCTTCCTTTTGCAAACCCA
CAAAGCTGTCAATAATGGTAGGCAAATTCGACTGACGTGTTTTATGATGATGATGAATTG
TCACGATACTTTTCCATCTTTGTGTTCGGATATTGTTGTCTTTCGGCCAATAATTTTAAT
GAAGCTTATGTAAAGAAAAAAAAAAAAAGCTTCAAAAAAAAAAAAAAAAAAATGTAAAGA
TGGTGGCTGTTAGCTTCAATATGATCTTNTGGGAACTTTACAAAGTTGTAATTGTTGTGA
TGAGATGTCTGTTGT

Homology of Contig U35_15129 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g11410.1	534	protein\|mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g70180.1	531
Arabidopsis v10	AT3G02090.2	535	\| Symbols: MPPBETA \| Insulinase (Peptidase family M16) protein \| chr3:365624-368534 FORWARD LENGTH=535