barSeed - Barley Seed Development Database

Probe CUST_22748_PI390587928

Source Contig U35_15130

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22748_PI390587928	Hv_44K_v2	GGACTTCCAGTTAACTCCTAACTGTAAAATGAATACTTGATACAAGTGAAATGTAATGGG	1529	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363969	1628	2e-24	1556 - 1615	100	60 / 60	plus	ABC02915 ABC02916
MLOC	MLOC_75530.1	2422	2e-24	1166 - 1225	100	60 / 60	plus	ABC02915 ABC02916
JLOC1	JLOC1_50391.1	2110	8e-25	1169 - 1228	100	60 / 60	plus
Harvest21	ABC02915	1595	3e-25	1506 - 1565	100	60 / 60	plus	ABC02915
Harvest35	U35_15130	1641	3e-25	1530 - 1589	100	60 / 60	plus

Contig Sequence (1641 bp)

>U35_15130 1641 Hv_44K_v2
TCGAGCACTGTTGGCCTACAAACACCGCCTCCTCCCCGCCGCTCTCCCGCCATGAAGCAG
CTCCACAAGTCCCCCACCCACGCGCCGTCGCCGGCGCACGCGCCGGCGTCCAAGATCTCC
AAGCCCGCGCGCCCCGGGCCGCGCACCTGGGTCGGCTACCTCCTCCGCGAGCAGCGCCTC
CTCTTCGTCCTCCTCGGCGCGCTCATCGCCACCTCCTTCTTCCTCCTCCGCCCCTACCTC
TTCTCCCTGTCGGCCTCCAACGCCGCCGACCGCAGCCCCATCTTCTCCTTCGTCGCCCAC
TCGTCCGACCCCCGCGGCGTCCCCGCGGGTTTCCGCCCGCCGCCCCGCCGCGTCGTCGTC
ACCGGCGGGGCGGGCTTCGTGGGCAGCCACCTCGTCGACAGGCTGCTGGAGCAGGGGGAC
AGCGTGATCGTGGTGGACAACTTCTTCACCGGGAGGAAGGAGAACGTCGCGCACCACCTG
CGGAACCCCAGGTTCGAGCTGCTCCGACACGACGTCGTCGAGCCCATCCTTCTCGAGGTC
GACCGGATCTACCACCTCGCGTGCCCCGCATCGCCCGTGCACTACAAATACAACCCCATC
AAGACGATCAAGACAAATGTCATGGGAACCTTGAATATGTTGGGTCTGGCAAAGCGAATT
GGTGCAAGGTTCTTGTTGACCAGCACAAGTGAAGTTTATGGTGACCCACTTGAGCATCCG
CAGAAGGAGACTTATTGGGGGCATGTTAATCCTATAGGTGTTAGAAGTTGCTATGATGAG
GGCAAAAGAACAGCAGAGACCTTGACTATGGACTACCATCGTGGTGGTGGTGTTGCGGTA
CGAATTGCTCGTATCTTCAATACATATGGCCCTCGTATGTGCCTGGATGATGGTCGTGTG
GTTAGCAATTTTGTTGCACAGGCACTGCGCAAACATCCAATGACAGTATATGGTGATGGA
AAACAAACTCGAAGTTTTCAGTATGTTTCTGATCTGGTTGCTGGATTGATGGCTCTGATG
GAGAGTGATCATATTGGCCCTTTCAATCTAGGAAACCCTGGAGAGTTCACCATGTTGGAA
CTTGCAGAGGTTGTGAAGGAAACAATCGACCCAATGTCAACAATTGAATTCAAGCCCAAC
ACAGCTGATGATCCCCATATGAGAAAGCCCGATATTACCAAGGCGAAGCAAATGCTAGGT
TGGGAGCCAAAGGTATCTCTTAAGGAAGGCCTTCCCTTGATGGTGACAGATTTCCGCAAA
AGGATCTTGGATGAGTAATCAAGGCAACAGTGAGATAAATCTATTTGGTTCTGAATGCCG
CGAATATAGGAAACGTGCTTCACCAACTGGATCCATTCAGTACAATTCTGTGTTTGTATA
ACGTCCTTGTAGAATCATTTAAATTTGTTTCCGTCTTGGTGAGATTGGACAGAAGTAGCA
AACTGTTTTTTGTCCACATGTGAAACTATAGAAGTTGAGTGAAGGATAGGTGAAGGGGCT
ATATTTCTGGAGCTATTGGGTTCAGTTTTGGACTTCCAGTTAACTCCTAACTGTAAAATG
AATACTTGATACAAGTGAAATGTAATGGGATGAGATTTGCATAAAAAAAAAAAAAAAAAT
TTCCGTTCAAAAAAAAGAAAA

Homology of Contig U35_15130 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g17230.1	420	protein\|NAD dependent epimerase/dehydratase family domain containing protein, expressed
Brachypodium v1_2	Bradi2g54380.1	409
Arabidopsis v10	AT3G62830.1	445	\| Symbols: UXS2, ATUXS2, AUD1 \| NAD(P)-binding Rossmann-fold superfamily protein \| chr3:23232539-23235353 FORWARD LENGTH=445