barSeed - Barley Seed Development Database

Probe CUST_22747_PI390587928

Source Contig U35_15131

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22747_PI390587928	Hv_44K_v2	ATGGATTTAGTAGCTAGAAGATGGATGCCGAGAGTAAGTCAGTGATCTTAACTGCGACCG	1584	GeneList: lightyellow MasterList: Sugar_nucleotide_interconverters_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.055	0.203	1.275	2.326	1.263	1.083
Raw	79.532	426.059	2484.820	6780.190	1359.380	1257.359

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75026.1	621	2e-24	376 - 435	100	60 / 60	plus	ABC02916
JLOC1	JLOC1_50026.1	2429	8e-25	1217 - 1276	100	60 / 60	plus
Harvest21	ABC02916	1642	6e-22	1562 - 1622	97	59 / 61	plus	ABC02916
Harvest35	U35_41184	465	3e-25	46 - 105	100	60 / 60	minus
Harvest35	U35_15131	1672	3e-25	1585 - 1644	100	60 / 60	plus

Contig Sequence (1672 bp)

>U35_15131 1672 Hv_44K_v2
GCACCAGAGAGCTCGATCAGGAGCCGATCGAGAGATCACAGGGACAAGTCCACCGCGTGA
TCCCATCGCCCGTCCATGGCGTCCTCCGAGCTCACCTACCGCGGCCAGCCGGCGGCGGCG
GCCGACGGCGCGCGCGCGGCCGAGAGCAAGCCGCGGACCAGGCAGCAGCTGCCGCAGCCG
CTCCGGTACGTGCTGGGCGAGCAGCGCCTCGTCTTCTCCTTGGTCGGCATGGCCCTCGCC
ACCCTCGTCTTCCTCCTCCTCTCCCCCTCCACCACCACCACGTCCACCACCAGCAGCGTG
GCGCACCTGGCGGCGGTGGGGCTGGCGTCGCGGCAGTACCACTCGGGCGGCGCGGGGCGG
ATGGCGTACGAGGAGGCCGGCGGGCGGCACGGGCGGGTGCCGCTGGGGCTGAAGCGCAAG
GGGCTGCGCGTGGTGGTGACCGGCGGGGCCGGGTTCGTGGGCAGCCACCTGGTGGACCGG
CTGCTGGCGCGCGGCGATAGCGTGATCGTGGTGGACAACTTCTTCACGGGGCGCAAGGAG
AACGTGGCGCACCACGCCGGGAACCCCAACTTCGAGATGATCCGGCACGACGTCGTCGAG
CCGATCCTGCTGGAGGTGGACCAGATCTACCACCTCGCCTGCCCGGCCTCCCCCGTGCAC
TACAAGTTCAACCCCGTCAAGACCATCAAGACCAACGTGGTGGGCACGCTCAACATGCTC
GGCCTCGCCAAGCGCGTCGGCGCCCGCTTCCTCCTCACCAGCACCAGCGAGGTCTACGGC
GACCCACTCCAGCACCCCCAGGTCGAGACCTACTGGGGCAACGTCAACCCCATCGGTGTT
CGGAGCTGCTACGACGAGGGCAAGAGGACGGCGGAAACACTGACCATGGACTACCACCGC
GGCGCCAACCTCGAGGTGAGGATCGCGCGGATCTTCAACACCTACGGGCCGCGCATGTGC
ATCGACGATGGCCGGGTCGTCAGCAACTTTGTCGCCCAGGCACTGAGGAAGGAGCCCCTG
ACGGTGTACGGCGACGGCAAGCAGACGAGGAGCTTCCAGTACGTCTCCGATCTGGTTGAG
GGGCTGATGAAGCTGATGGAGGGGGAGCACGTGGGGCCGTTCAACCTGGGGAACCCGGGG
GAGTTCACGATGCTGGAGCTGGCCAAGGTGGTGCAGGACACCATCGACCCCAACGCAAGG
ATCGAGTTCCGGGCCAACACCGCCGACGACCCGCACAAGCGCAAGCCGGACATCACCAAG
GCCAAGGAGCTGCTCGGGTGGGAGCCCAAGGTGGCGCTCCGGAACGGCCTCCCGCTCATG
GTCCAGGACTTCCGCACCCGCATCTTCGGCGACCAGAAGCAGCAGCAACCCGACGGCGCC
GAGTAGTCGTCCCGTCGTCCTCCATCTCCATTCCGTTCGTGTCTCGTCTTTGTTATGTAG
GATTTGTTGAGGGGGGAGGAGAAGGAACGTGTGAGTGACAGTAACAGCAGGGATACCGGG
AATGAATGAATGAAACCGGGGGAATATACACCATCATCATATCCATTATCGACTGTGTAG
CTTTTCTTTTTAGCGTCTTATATCATGGATTTAGTAGCTAGAAGATGGATGCCGAGAGTA
AGTCAGTGATCTTAACTGCGACCGCGTGCCCGAAATTCGTTCGCGTTCTTCT

Homology of Contig U35_15131 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g47700.1	446	protein\|NAD dependent epimerase/dehydratase family domain containing protein, expressed
Brachypodium v1_2	Bradi1g18020.1	449
Arabidopsis v10	AT3G62830.1	445	\| Symbols: UXS2, ATUXS2, AUD1 \| NAD(P)-binding Rossmann-fold superfamily protein \| chr3:23232539-23235353 FORWARD LENGTH=445