barSeed - Barley Seed Development Database

Probe CUST_22739_PI390587928

Source Contig U35_15138

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22739_PI390587928	Hv_44K_v2	CTTGGAGTCGTTGTACAATATAATCTGATTCGTATACAGACACGCTTGACTGGCAAAAAA	697	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.265	1.519	1.389	0.923	0.399	0.673
Raw	583.141	1121.446	888.785	924.722	137.037	258.754

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_5735.1	871	4e-23	593 - 649	100	57 / 57	plus
Harvest21	ABC02804	671	1e-23	586 - 642	100	57 / 57	plus	ABC02804
Harvest21	ABC50624	711	6e-22	63 - 119	98	56 / 57	minus
Harvest35	U35_15138	785	3e-25	698 - 757	100	60 / 60	plus
Harvest35	U35_15151	1152	6e-22	1034 - 1090	98	56 / 57	plus

Contig Sequence (785 bp)

>U35_15138 785 Hv_44K_v2
AAAGCACAGAGCATTTAGTCTATGGGAAAGACAATCTTTCGTGCAAAGAATGGAGGAAAC
CTCCAGGTTCTGTTGATGGAAAGAGGAAAATAGACGCTGCAAATCCTGGTCCAGAAGATG
CTGCCAAGCTTATAAGGTTCTATTTATGTTGTTGGCACAGCATCTTAGGTGGCACCAGCA
ACAACGATTAAGCAGTATCAGTGCTATTCGAACAACCAAAGCTAGCCAGCAAATAGATGG
ATTTCTCAGGACTATGGTGTGCTAGCCCAAGAATACTGTGAACGGAGAGATGAACTTCTT
GGATCCCTTTATGACCTTGCAAAGCAAATTATAGAAGCAAAAATATCAGGAGTCTGGCAT
CATTTGTGATGGAGCTTTTGAGAGAATCAGGATCTGCAAGCATGCCAATGAAATCTAATC
TATGGTCTCAGCTGGAAGGACTCACAGATATGCTACTAGAGGGATATATTGGTCTATTAA
CTGCCAAATTTGAACATGGGCCGGACCATGGTGTAAAGCTGTTGTAAAGCTGGCTTGACG
AAGGCAAGTACTACAGGGCGACGTGTGAAATTGAGATGTTGATTGAACCAAAGGCTTGGG
ATTGTGTAAGATAACAATCACCTGGAGATAGTATTTGTAGAACCAACCGTGGCTGTCCCT
AAGTAGGTTTTGGACTTCTTTAGGAATCTAAATAGGACTTGGAGTCGTTGTACAATATAA
TCTGATTCGTATACAGACACGCTTGACTGGCAAAAAAAAAAAAAAAAAAACTGTGCCTGC
TACCA

Homology of Contig U35_15138 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None