barSeed - Barley Seed Development Database

Probe CUST_22734_PI390587928

Source Contig U35_41404

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22734_PI390587928	Hv_44K_v2	TTGGTCTCTCTTAGCATCGACAATGATCTTCCATTGCAGATGACTTCAGCATCATTACTA	343	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.094	1.535	1.943	1.194	0.632	0.561
Raw	13.157	26.575	30.293	28.709	3.844	4.324

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69925.1	1767	2e-24	1053 - 1112	100	60 / 60	minus	ABC03865 ABC03867
JLOC1	JLOC1_46364.1	2053	8e-25	664 - 723	100	60 / 60	plus
Harvest35	U35_41404	730	3e-25	344 - 403	100	60 / 60	plus

Contig Sequence (730 bp)

>U35_41404 730 Hv_44K_v2
CTTGTTCATTCCATCAGTCTAAAAGATCATTCTGGTAATTATTGAATCCTACTAAAAAAA
TATCCTTGATTCTGCATCTTCTATAGTGTGATTTGTAGATTAACAATTGCAGAATGATGG
TAAAGGTCTATAGCATGAGGTCTCTTTATCAGAATCCTGGATTTTTATATGTTGTGATTT
ATTTTATTTTATTTTATTTGTTTTGCGGGCGACTGATGCTTTCTCCCAAACATGAAGAGG
ATTATACCCATCATGGTTCAATGTTCATTACGATTGTGATATTTTACATATGATTCATGT
CCATGATGAAATTAATTACTTTTGTGAGAGAAGTTTGTTTGTGTTGGTCTCTCTTAGCAT
CGACAATGATCTTCCATTGCAGATGACTTCAGCATCATTACTACTGCTGGTTGTGATGGT
CCTGCACAAAGGTCAGCAAAAAGGAAGAGAAAGAACCAATTCAGGGGTATCCGTCAGCGC
CCCTGGGGTAAGTGGGCTGCTGAAATCAGAGATCCTAGCAAAGGTGTCCGTGTTTGGCTT
GGTACTTTCAACAGTGCTGAAGAAGCTGCAAGAGCCTACGATGTTGAAGCACGCAGGATC
CGTGGCAAGAAGGCCAAGGTAAACTTTCCAGAGGAACCAACAGTTCCTCAGAAGCGCTGT
GTTCGCCCTGCTCCTCTTAAAGCAACCAAGCTAAGCGCATCACAGGAACCTACCGTCATA
CCAGCAGTCA

Homology of Contig U35_41404 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54160.2	366	2e-54	protein\|AP2 domain containing protein, expressed
Brachypodium v1_2	Bradi3g60120.3	395	5e-54
Arabidopsis v10	None