barSeed - Barley Seed Development Database

Probe CUST_22733_PI390587928

Source Contig U35_27111

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22733_PI390587928	Hv_44K_v2	CTAATACACCTGAAGAAGCCTGGGAGGAACTTATTGGTCGGATATCTTACTTCTTTACAG	438	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52096.1	3436	2e-24	2904 - 2963	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.10	3275	2e-24	2749 - 2808	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.9	3387	2e-24	2749 - 2808	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.6	3493	2e-24	2851 - 2910	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.7	3606	2e-24	2851 - 2910	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.8	3198	2e-24	2706 - 2765	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.5	3231	2e-24	2709 - 2768	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.4	3311	2e-24	2746 - 2805	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.3	3533	2e-24	2971 - 3030	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.2	3617	2e-24	2972 - 3031	100	60 / 60	minus	ABC18874
JLOC1	JLOC1_33334.5	3551	8e-25	518 - 577	100	60 / 60	plus
JLOC1	JLOC1_33334.4	3617	8e-25	584 - 643	100	60 / 60	plus
JLOC1	JLOC1_33334.3	3263	8e-25	455 - 514	100	60 / 60	plus
JLOC1	JLOC1_33334.2	3384	8e-25	395 - 454	100	60 / 60	plus
Harvest35	U35_27111	498	3e-25	439 - 498	100	60 / 60	plus

Contig Sequence (498 bp)

>U35_27111 498 Hv_44K_v2
AATTCGTGACCCGTCCTTTGCCCTCCGATTCCATTCCCACCCCTCGGTCGCAAATTCACT
CTGTTCCGCCCTGATCGATCCATCGATTCTGCAGGGCCGATTGGAGGATTTAGCCACGGT
GGTCAGGCGTTGGGGGTCGATCGAAGCCGAGACGAGTCGCAATGCCGACGGCGACGGCGA
CGCCCAAGGCGGTGATCCACCAGCGGTACGGCGCCAAGGCCGTCTACAAGGTGGACGAGG
TGCGGGAGGACGCTGACGGCGTCTGCCCCGGCCTCGCGCTGCCGCAGAACACCAGGTGCG
TCTACCGATGCCAGCTTGACATCCCCGAAGTGCTCAGCGTCGCCACGCCGGGGACCTTCG
TCAGGAAGAAGGACGCCGAGCAGGCCGCCGCGCAGATCGCCATCGAAAAGCTTGGTATTC
AGCCCACATCAAATATTCCTAATACACCTGAAGAAGCCTGGGAGGAACTTATTGGTCGGA
TATCTTACTTCTTTACAG

Homology of Contig U35_27111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None