barSeed - Barley Seed Development Database

Probe CUST_22729_PI390587928

Source Contig U35_27114

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22729_PI390587928	Hv_44K_v2	GGAGATGGTGGACGAGACGCATCCTCCCAAGTTTAGGGAGTTCGTGTTCAGGGAATTCAT	545	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.409	0.228	0.126	2.115	7.539	11.659
Raw	12.548	9.311	4.233	142.155	183.752	303.711

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC34111	230	3e-25	171 - 230	100	60 / 60	plus
Harvest35	U35_27114	605	3e-25	546 - 605	100	60 / 60	plus

Contig Sequence (605 bp)

>U35_27114 605 Hv_44K_v2
CGGAACCAGACGCGGTACTGGCGTGACTACCTCAAGCTGCGGTGCCACCCGGTTTCCAGG
ACCTCGTCGGACACTGGCCGGCTAAGCCAGAGAGCTTCAGGAGCTCCCTCACCGAGTTCT
CCTCACAGGTCCATGAGCTAGCGCAGACGCTGCTCCAGCTCATCGCCGAGGGGCTCGGCC
TGGACGGCGGCTTCTTCACAGGCGACCTCAGCGGCGGGGACACCCAGATGAACGTCAACT
ACTACCCGCCGTGCCCAGACCCGAGCGTCACGCTGGGACTGCTCCCGCACTGCGACCGTC
ACCTCCTTACCGTGCTCTCCCAGGGCGACGTGGCCGGCCTCCAGGCGAGGTACCGCGGGC
GGTGGCTCGTCGTCCAACCGGGCCCCGGCGCCTTTGTCATCAACTTCGGGCACCAGATGG
AGATCGTCACCAACGGTCGTGCTGGCGAGCGTGGAGCACCGTGCCCTCACCAACTCCGTC
GTGGCGAGGATGTCCGTGGCCACCCTCATCATGCCCAATATGGACTGTCTTATTGGCCCG
GCGCCGGAGATGGTGGACGAGACGCATCCTCCCAAGTTTAGGGAGTTCGTGTTCAGGGAA
TTCAT

Homology of Contig U35_27114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None