- Probe CUST_22722_PI390587928
- Source Contig U35_15141
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22722_PI390587928 | Hv_44K_v2 | AGGCAAAACTACAGGGGGTTTTGTGTAAGAACGAAACGTTTTCTTAAAGTATCCACTTAA | 514 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.402 | 1.603 | 1.274 | 0.743 | 0.303 | 0.403 |
| Raw | 379.073 | 667.866 | 473.478 | 419.833 | 62.400 | 88.842 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_41249.1 | 728 | 2e-24 | 533 - 592 | 100 | 60 / 60 | plus | ABC02804 ABC02809 ABC02810 ABC02811 ABC50535 |
| JLOC1 | JLOC1_26908.1 | 672 | 8e-25 | 558 - 617 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02809 | 1033 | 3e-25 | 954 - 1013 | 100 | 60 / 60 | plus | ABC02809 |
| Harvest35 | U35_15141 | 594 | 3e-25 | 515 - 574 | 100 | 60 / 60 | plus |
Contig Sequence (594 bp)
>U35_15141 594 Hv_44K_v2 GAGATGAACTTCTTGGATCCCTGTATGACCTTGCAAAGCAAATTATAAAAGCAAAAATAT CAGCTGGAAGGACTCACAGATATGCTACTGGAGGGATATATTGGTCTATTAACTGCCAAA TTTGAACATGGGCAGGACCATGGTGTGCTAGCCCAAGAATACCTGTTGTAAAGCTGGCTT GACGAAGGCAGGTACTACAGGGCGACGTGTGAAATTGAGATGTTGATTGAACCAAAGGCT TGGGATTGTGTAAGATAACAATCACCTGGAGATAGTATTTGTAGAACCAACCGTGGCTGT CCCTAAGTAGGTTTTGGACTTCTGTAGGAATCTAAATAGGACTTGGAGTCGTTGTATAGT ATAATCTGATTCGTACACGGACACGCTTGACTGGCAAATTATCTGTAGCACCAACTGTGC CTGCTACCAAGTAGGTTTTGGACCTATGTAGGAATCTAAATAGGATTTGAGTAGTTGTAT CCAGATTCAGGTGAAAAAGGATCGCGGGTTGAGTAGGCAAAACTACAGGGGGTTTTGTGT AAGAACGAAACGTTTTCTTAAAGTATCCACTTAAAACAAAAAAAAAAAAAAAAA
Homology of Contig U35_15141 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |