barSeed - Barley Seed Development Database

Probe CUST_22712_PI390587928

Source Contig U35_27120

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22712_PI390587928	Hv_44K_v2	CATAGTATTTATCGACGAAATTGATGTGATTGGTTGGCGCAGAGACGCTGAAGGTTCAAC	473	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366401	2408	2e-24	991 - 1050	100	60 / 60	plus	ABC31830
MLOC	MLOC_77428.3	2433	2e-24	1425 - 1484	100	60 / 60	minus	ABC31830
MLOC	MLOC_77428.4	2428	2e-24	1383 - 1442	100	60 / 60	minus	ABC31830
Harvest21	ABC25975	637	3e-25	474 - 533	100	60 / 60	plus
Harvest35	U35_27120	637	3e-25	474 - 533	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_27120 637 Hv_44K_v2
AGTGCACCCCATTACATATCAGAGAAATACCTACTTAAAAGGCAGCTTCTTCGTACCATC
TCTGCCCTTACAGTTACTGGCTTTGCCATCTATGGCATTAAGGTTGTGCTTGATGGTGTC
AAAGACACCAAAGTTGGCAATTTCGATGGTTTGAAGAAGGTACCGACTTCAGATATAAGC
ACAAAACTCAGTGATGTAAAGGGGGTTGATGAAGCCAAAGCTGAACTCGAAGACATAGTT
CACTACCTAAGAGATCCCGACAGTTTCAAACGCCTTGGTGGCAAGTTTCCTAAGGGTGTT
TTGCTTGTGGGCCAACCTGGCACAGGGAAGACCATGCTAGCAAGGTCAATGGCTGGGGAA
GCCGGCGTCCCTTTCTTCTCCTGCAGTGGCAGTGATTTCGAAGAGATGTATGTGGGTGTT
GGTGCTAGGAGAGTCAGGGAGCTCTTCAGTGCAGCAAGGAACCAATCTCCTTGCATAGTA
TTTATCGACGAAATTGATGTGATTGGTTGGCGCAGAGACGCTGAAGGTTCAACTCCGCAG
AGGCAGGCTCTGAACCAGCTGCTTGTTGAGATGGATGGCTTCAAGCAGAATGATGGGATT
ATTGTGATCGGAGCAACGATCTTCCCGCAGTCACTTG

Homology of Contig U35_27120 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g39250.1	710	9e-77	protein\|OsFtsH4 FtsH protease, homologue of AtFtsH4, expressed
Brachypodium v1_2	Bradi2g14330.1	715	8e-79
Arabidopsis v10	AT2G26140.1	717	5e-78	\| Symbols: ftsh4 \| FTSH protease 4 \| chr2:11131939-11135126 REVERSE LENGTH=717