barSeed - Barley Seed Development Database

Probe CUST_22701_PI390587928

Source Contig U35_27127

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22701_PI390587928	Hv_44K_v2	TACCTGAGAACAAGCTTGAAATGGTACATAAGCTTTTCAAGTTTATTGAGGATGGAGATC	584	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252493.1	1588	2e-24	573 - 632	100	60 / 60	plus	ABC21964
MLOC	MLOC_12094.1	748	2e-24	105 - 164	100	60 / 60	minus	None
JLOC1	JLOC1_8086.1	820	8e-25	597 - 656	100	60 / 60	plus
Harvest21	ABC47801	615	3e-25	553 - 612	100	60 / 60	plus
Harvest35	U35_27127	647	3e-25	585 - 644	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_27127 647 Hv_44K_v2
GCCTGAGCCGGGTGCCGAACCCATCTACAGCTCCCAAAACCGCAAAACCAGGAAACCCAC
GCACCCGTCCGCCGCCCCAGCCGCGCCGCTTCCTCTCGCCATCCCCCCTCGGCGCCGCAA
GCCCGTAACACATATGGCGGGCACCGCGAGGAAGGCATCGGCCGTGCTGTACCACTACCC
GTGCCCGGACGGCGCATTCGCCGCGCTCGCCGCTCACCTCTACTTCTCCGCCGCGGCCCT
CCCCGTCCGATTCTTCCCCAACACCGTCTACGACCCCATCAGGAGCGATGGTCTTCCGTT
TGATGAAATCGAAGATGTTTACCTTCTTGACTTCGTAGGGCCTCCTGGTTTTGTTGCTGA
TATAGCCCCGAAGGTTCAGAGTGTTACAATCTTAGACCATCATAAGACTGCCATGGAAAG
TCTGTGTGGGAGTGCCACACTTGGAGAAAACGTGAATAAGGTGATTGACATGCAACGCAG
TGGAGCAACAATTGCATTCGACTACTTTAGGAACAAGTTATTGACTGAAGCTAGTACTTC
ACGGAATCATGGAAGTGGTAGTTCTGCAACTGAAGTGAAATATCTACCTGAGAACAAGCT
TGAAATGGTACATAAGCTTTTCAAGTTTATTGAGGATGGAGATCTAT

Homology of Contig U35_27127 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g45950.1	353	7e-84	protein\|expressed protein
Brachypodium v1_2	Bradi3g51940.1	350	2e-94
Arabidopsis v10	None