barSeed - Barley Seed Development Database

Probe CUST_22698_PI390587928

Source Contig U35_39100

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22698_PI390587928	Hv_44K_v2	TCTGATTCAGATGTTTACCTATTTGATGATCCACTGAGTGCATTAGATGCCCATGTTGGT	553	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56261.2	3471	2e-24	2870 - 2929	100	60 / 60	minus	ABC05380
MLOC	MLOC_56261.3	3295	2e-24	2697 - 2756	100	60 / 60	minus	ABC05380
MLOC	MLOC_56261.4	3388	2e-24	2786 - 2845	100	60 / 60	minus	ABC05380
MLOC	MLOC_56261.5	3448	2e-24	2786 - 2845	100	60 / 60	minus	ABC05380
MLOC	MLOC_56261.1	3575	2e-24	2910 - 2969	100	60 / 60	minus	ABC05380
JLOC1	JLOC1_36377.1	3660	8e-25	607 - 666	100	60 / 60	plus
Harvest35	U35_39100	616	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (616 bp)

>U35_39100 616 Hv_44K_v2
GCCAAATCTGATAACTCAGGTTGTTAACTGTAAGGTTTCACTGAAACGACTGGAGGATCT
CCTTTTGGCTGATGAGAGAATACTTCTGCCAAATCCACCTATTGATCCTCAGCTTCCAGC
CATTTCTATCAAGAACGGAAACTTTTCATGGGAATTGCAGGCCGAGCGACCAACACTATC
AAATGTCAATCTGGACGTGCCTGTCGGCAGTTTAGTTGCAATAGTAGGAAGCACCGGGGA
GGGGAAGACTTCTCTTATTTCTGCAATGCTTGGTGAAATACCACCAGTATCAGGATCAGA
TACCTCGGTGGTCATTCGTGGTTCTGTGGCTTATGTTCCTCAAGTTTCTTGGATCTTCAA
TGCTACCGTCCGGGATAACATATTGTTTGGGTCTCCATTCCAACCTCCACGCTACGGGAG
AGCAATAGATGCTACTGCATTACGACATGACCTTGACCTGCTCCCAGGTGGTGATCTCAC
AGAGATTGGAGAAAGGGGAGTGAATATTAGTGGGGGGCAAAAGCAAAGAGTTTCAATGGC
AAGAGCTGTTTATTCTGATTCAGATGTTTACCTATTTGATGATCCACTGAGTGCATTAGA
TGCCCATGTTGGTCGA

Homology of Contig U35_39100 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52900.2	1416	2e-123	protein\|ABC transporter family protein, putative, expressed
Brachypodium v1_2	Bradi5g22077.1	1630	6e-125
Arabidopsis v10	AT2G34660.1	1623	7e-103	\| Symbols: ATMRP2, EST4, MRP2, ABCC2, AtABCC2 \| multidrug resistance-associated protein 2 \| chr2:14603267-14612387 FORWARD LENGTH=1623