barSeed - Barley Seed Development Database

Probe CUST_22697_PI390587928

Source Contig U35_39102

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22697_PI390587928	Hv_44K_v2	TTTGTTGGTGATGCTGTGTTGGATCATCTCATCACGAAGCATCTATTTTTTACATATACT	727	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.682	0.891	2.085	2.082	0.971	0.905
Raw	4.391	9.780	23.012	35.905	4.845	5.440

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30232.3	5695	2e-24	3946 - 4005	100	60 / 60	plus	ABC11109
MLOC	MLOC_30232.4	5584	2e-24	3827 - 3886	100	60 / 60	plus	ABC11109
MLOC	MLOC_30232.2	5719	2e-24	3963 - 4022	100	60 / 60	plus	ABC11109
MLOC	MLOC_30232.1	5629	2e-24	3872 - 3931	100	60 / 60	plus	ABC11109
JLOC1	JLOC1_20020.3	5401	8e-25	3646 - 3705	100	60 / 60	plus
JLOC1	JLOC1_20020.2	5505	8e-25	3750 - 3809	100	60 / 60	plus
JLOC1	JLOC1_20020.1	5464	8e-25	3709 - 3768	100	60 / 60	plus
Harvest35	U35_39102	787	3e-25	728 - 787	100	60 / 60	plus

Contig Sequence (787 bp)

>U35_39102 787 Hv_44K_v2
GTTAAGATATTAGAAGCCTTGACTGCTGCATCATGCCAAGAAACATTCTGCTATGAAAGA
GCAGAGTTACTGGGTGATGCATACCTGAAATGGGTCGTGAGTAGATTCCTTTTCCTAAAA
TATCCTCAGAAGCATGAGGGTCAGCTTACAAGGATGAGGCAGCAGATGGTCAGTAACATG
GTCCTCTATCAATTTGCCCTGAATAAAACTCTTCAATCATTTATTCAAGCAGATCGGTTT
GCCCCATCAAGATGGGCAGCTCCCGGAGTACTACCTGTATTTGATGAAGAGACGAGAGAA
TCTGAACCGTCCATCTTTGGTGGGGAGTCAATACCTGGTAATGAATTACAGAAGGATTAT
GACGATGACTACACCGATAGCATTCAAGAGGAGGGCGAAATTGATGGAGATTCTAGCTGC
TATCGTGTTCTCTCAAGCAAGACATTAGCAGATGTTGTTGAAGCACTTATTGGGGTCTAT
TATGTAGCAGGAGGGAAAATTGCTGCGAACCACCTGATGAAGTGGATTGGGATCCACGCC
GAATTGGATCCTCAAGAGATCCCTCCCCCAAAGCCATATAATATACCTGAGAGCATATTG
AAAGGCATTGACTTTGAGACATTGGAAGGCATCTTGGGTACCNAAATCCAGAATAAAGGT
TTCTTATTGAGGCTATAACGCATGCATCCAGGCCATCTTCTGGTGTTTCCTGTTACAGCG
GTTGGAATTTGTTGGTGATGCTGTGTTGGATCATCTCATCACGAAGCATCTATTTTTTAC
ATATACT

Homology of Contig U35_39102 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02970.1	1884	3e-122	protein\|Dicer, putative, expressed
Brachypodium v1_2	Bradi1g77087.1	1901	4e-131
Arabidopsis v10	AT1G01040.2	1910	1e-95	\| Symbols: DCL1 \| dicer-like 1 \| chr1:23519-31079 FORWARD LENGTH=1910