barSeed - Barley Seed Development Database

Probe CUST_22691_PI390587928

Source Contig U35_39109

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22691_PI390587928	Hv_44K_v2	TTCAATGGGGGATCGAGACGAGGAGGAGGAGCTCCACATGGCGCTCCGTATGAGCCTCCA	147	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376361	2586	7e-23	271 - 330	98	59 / 60	plus	None
MLOC	MLOC_3308.1	746	7e-23	62 - 121	98	59 / 60	minus	None
JLOC1	JLOC1_1980.1	611	4e-23	180 - 239	98	59 / 60	minus
Harvest35	U35_39109	375	3e-25	148 - 207	100	60 / 60	plus

Contig Sequence (375 bp)

>U35_39109 375 Hv_44K_v2
ATGCCCCAGGCCCGAATTCCAACAACCACCGCTCCCGCTTCACTTCGTCCCTAGCTCGAG
GCCTACCACCGGGGGCGCAGGGCCAAACCCTGCCCTAGGGTTTGGGTTTGGAGCCGGATC
GATCCGGTCAGGGTTCGGCGGAGCGGCTTCAATGGGGGATCGAGACGAGGAGGAGGAGCT
CCACATGGCGCTCCGTATGAGCCTCCACGGCTCGCCGCCGGCGCAGCCCGAGCCCAAGCG
CAGCAAGCCCCCATCGCCCGCCGGGGAGTCGCCTGATGTTTAGGCGCGCCGCAAGCAGCG
CGAGCTCATGGCCGCCGCCGCCGAGAAGCGCCTACGCGCCGTTGCCCCGACCGACGGCAT
CGTCGTGGCGCCGCC

Homology of Contig U35_39109 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None