barSeed - Barley Seed Development Database

Probe CUST_22690_PI390587928

Source Contig U35_15150

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22690_PI390587928	Hv_44K_v2	AATCTGATTCGTACACGGACACGCTTGACTGGCAAATTATCTGTAGCACCAACTCTGTAG	852	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.118	1.281	1.256	0.949	0.400	0.530
Raw	1991.130	3528.647	3089.333	3637.383	537.554	782.467

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_41249.1	728	2e-24	433 - 492	100	60 / 60	plus	ABC02804 ABC02809 ABC02810 ABC02811 ABC50535
JLOC1	JLOC1_26908.1	672	8e-25	458 - 517	100	60 / 60	plus
Harvest21	ABC02810	626	3e-25	50 - 109	100	60 / 60	minus	ABC02810
Harvest21	ABC50535	687	6e-22	44 - 97	100	54 / 54	minus	ABC50535
Harvest21	ABC02809	1033	6e-22	802 - 855	100	54 / 54	plus	ABC02809
Harvest35	U35_15150	961	3e-25	853 - 912	100	60 / 60	plus
Harvest35	U35_48608	687	6e-22	44 - 97	100	54 / 54	minus
Harvest35	U35_15141	594	6e-22	363 - 416	100	54 / 54	plus

Contig Sequence (961 bp)

>U35_15150 961 Hv_44K_v2
AATATTTGTAATGCCATACATGATATTTTGTTTTGAGTGCATTGCATGTTAAAGTAAAAT
TGGATGCCATGAAGTTATATATAATTGAACAAGCAAAATGGACTGAAAAAGAATATAAAG
TATTGAATATAAGTGTCTACAATTTCACTGATTGCTAAGCACGGAGCATTTAGTCTATGG
GAAAGACAATCTTTCCTGCAAAGAATGGTGGAAACCTCCAGGTTCTGTTGATGGAAAGAG
GAAAATAGACGGTGCAAATCCTGGTCCAGAAGATGCGGCCAAGCTTCTAAGGTAGCACCA
GCAACAACGATTAAGCAGTATCAGTGCTATTCGAAAACCAAAGCTAGCCAGCAAATAGAT
GGATTTCTCAGGACCATGGTGTGCTAGCCCAAGAATACTGTGAACGGAGAGATGAACTTC
TTGGATCCCTGTATGACCTTGCAAAGCAAATTATAGAAGCAAAAATATCAGGAGTCTGGC
ATCATGTGTGATGGAGCTTTTGAGAGAATCAGGATCTGCAAGCATGCCAATGAAATCTAA
TCTATGGTCTCAGCTGGAAGGACTCACAGATATGCTACTGGAGGGATATATTGGTCTATT
AACTGCCAAATTTGAACATGGGCAGGACCATGGTGTGCTAGCCCAAGAATACCTGTTGTA
AAGCTGGCTTGATGAAGGCAGGTACTACAGGGCGACGTGTGAAATTGAGATGTTGATTGA
ACCAAAGGCTTGGGATTGTGTAAGACAACAATCACCTGGAGATAGTATTTGTAGAACCAA
CGGTGGCTGTCCCTAAGTAGGTTTTGGACTTCTGTAGGAATCTAAATAGGACTTGGAGTC
GTTGTATAGTATAATCTGATTCGTACACGGACACGCTTGACTGGCAAATTATCTGTAGCA
CCAACTCTGTAGCACCAACTGTGCCTGTGTNAAAAAGGATCGCGGGTTGAGTAGGCAAAA
C

Homology of Contig U35_15150 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None