barSeed - Barley Seed Development Database

Probe CUST_22687_PI390587928

Source Contig U35_15153

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22687_PI390587928	Hv_44K_v2	CTACTTGTACACCACACCAACCATGGATTGAGAGGAATGTTTCTGCTTCTGTGTAAAAAA	1930	GeneList: bisque4 MasterList: Transferase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.869	3.156	2.326	0.684	0.107	0.126
Raw	486.979	1250.059	791.988	382.283	19.570	26.619

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362212	2907	9e-22	2796 - 2850	100	55 / 55	plus	ABC07541 ABC07542 ABC08486
MLOC	MLOC_23774.1	699	9e-22	157 - 211	100	55 / 55	minus	ABC08486
MLOC	AK360248	1861	3e-21	1808 - 1861	100	54 / 54	plus	ABC07541 ABC07542 ABC08486
MLOC	AK248564.1	1818	3e-21	1765 - 1818	100	54 / 54	plus	ABC07541 ABC07542 ABC08486
JLOC1	JLOC1_16402.1	1913	5e-22	1800 - 1854	100	55 / 55	plus
Harvest21	ABC08486	2001	3e-25	1931 - 1990	100	60 / 60	plus	ABC08486
Harvest35	U35_15153	2001	3e-25	1931 - 1990	100	60 / 60	plus

Contig Sequence (2001 bp)

>U35_15153 2001 Hv_44K_v2
TCCTGCTGCCGCGCCTCACTCACTCTACGCCTCTACGCTCTGACCAACGCCTGCGTCGTG
CTCTTCATGATCCAGAGCGCCGACCGCCTCATCCTCTGCCTCGGCTGCTTCTGGATCAAG
CTCAGGGGAATCAAGCCCGTCGCCAACGCCGCCGCCGCCGGCAAAGACGACGTCGAGGCC
GGCGCCCAGGAGGAGGAGTTCCCCATGGTGCTCGTCCAGATTCCAATGTGCAACGAGAAG
GAGGTGTATCAGCAATCCATTGGAGCTGTCTGCAACCTGGACTGGCCGAGATCGAATTTC
TTGGTGCAGGTGCTTGACGATTCTGATGATGCTGCGACTTCAGCTCTCATCAGAGAGGAG
GTTGAGAAATGGCAACGGGAGGGTGTCCGGATATTGTACCGACACCGGGTGATACGTGAT
GGCTACAAGGCTGGAAATCTCAAGTCTGCCATGAACTGCAGCTACGTGAAAGATTATGAA
TTTGTTGTTATCTTTGATGCCGATTTCCAACCACAAGAAGATTTTCTGAAGCGAACTGTG
CCCCATTTCAAGGGCAAAGAGGATGTTGGACTAGTTCAAGCAAGGTGGTCTTTTGTAAAC
AAGGATGAGAACTTGTTAACCAGGCTGCAAAACATAAATCTGTGCTTCCACTTTGAGGTG
GAACAGCAGGTTAATGGGGCATTCCTCAATTTTTTCGGGTTCAACGGAACCGCGGGAGTG
TGGAGAATTAAGGCACTCGAGGACTCTGGAGGATGGATGGAGAGAACGACAGTTGAAGAC
ATGGATATTGCTGTCCGAGCACATCTAAAGGGATGGAAGTTTCTGTATCTTAACGATGTT
GAGTGCCAGTGTGAATTGCCGGAGTCATATGAAGCATACAGAAAACAGCAACATCGATGG
CATTCTGGTCCGATGCAGTTGTTTAGACTCTGCTTTGTGGACATTATCAAATCAAAGATT
GGATTCTGGAAGAAATTCAACCTGATATTCCTTTTCTTTCTCCTCCGAAAACTTATTCTG
CCCTTCTATTCATTCACTCTCTTCTGCGTCATACTTCCAATGACAATGTTTGCTCCTGAA
GCAGAGCTACCTGCTTGGGTGGTGTGCTACATTCCAGCAACCATGTCCTTGCTTAACATC
CTCCCAGCCCCAAAGTCCTTCCCATTCATCGTTCCCTACCTTCTGTTTGAGAACACCATG
TCAGTGACCAAGTTCAACGCCATGATCTCCGGCTTGTTCCAGCTCGGGAGCGCCTACGAG
TGGGTCGTCACCAAGAAATCAGGCCGTTCTTCGGAGGGCGATCTCGTCGCCCTCGTCGAG
AACGAGAAGCCATCCAAGCAGCAGAGAGTAGGGTCCGCGCCGAACCTCGACTCCCTAGCA
GCAAAGGAGGAACTGTACCCGAAAGCGGATCCCAAACCCAAAAAGAAGAAACACAATAGG
TTATACAGGAAAGAACTAGCACTCTCCTTCCTCCTCTTGACAGCAGCAGCTCGCAGCCTG
CTGTCGGTTCAGGGCATACATTTCTACTTCCTTCTGTTCCAGGGGGTGTCGTTCCTGGTC
GTCGGGCTCGACCTCATCGGCGAGCAGGTCGAGTGATGAGGATAGGATACAGCAAGCAGT
ATAATGGATTTTTCTCTTTCTCATTTGATAAAGCGCGTGGAATCATGCCGCCGACGCCCG
GTTTGAAGCGCGAGAGGAGGCTCTGGCTGATTGATCATCAGAGAGGCTGAAATGAAAATG
TTGGGGTTGTAGATATATGGCTTGGGACTCGGCCTGTGAGGTCCCAATTCTTTTGTAAGA
AGAACAGATCGGTCTAGATTGGGGTTAATTCTCTTCTTCTTTGACAGTTTACCTTCAAAT
GGAGTGATACTGTTGTCATCGCATCATCATCTGTAATGTACTTTGGAATGCATAGTGAGT
GATACTTGTTCTACTTGTACACCACACCAACCATGGATTGAGAGGAATGTTTCTGCTTCT
GTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15153 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g56130.1	691	protein\|CSLC1 - cellulose synthase-like family C, expressed
Brachypodium v1_2	Bradi2g50967.1	687
Arabidopsis v10	AT4G07960.1	699	\| Symbols: ATCSLC12, CSLC12 \| Cellulose-synthase-like C12 \| chr4:4802628-4805114 REVERSE LENGTH=699