barSeed - Barley Seed Development Database

Probe CUST_22686_PI390587928

Source Contig U35_15154

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22686_PI390587928	Hv_44K_v2	GTTGACAGACTTTACCTTCAAATGAAGATAATACTTGTTTTCGCCTTGTACTTTTTGCCA	1760	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.439	2.562	1.372	0.671	0.480	0.616
Raw	24.345	72.661	30.827	25.216	5.121	8.851

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50391.1	580	2e-24	324 - 383	100	60 / 60	plus	ABC18825 ABC47220
JLOC1	JLOC1_32159.1	2394	8e-25	2139 - 2198	100	60 / 60	plus
Harvest21	ABC47220	194	3e-25	17 - 76	100	60 / 60	minus	ABC47220
Harvest21	ABC18825	709	3e-25	17 - 76	100	60 / 60	minus	ABC18825
Harvest35	U35_15154	1836	3e-25	1761 - 1820	100	60 / 60	plus

Contig Sequence (1836 bp)

>U35_15154 1836 Hv_44K_v2
TGGAACCTAGTGCTGATGCCCATGTGCAACGAGCGAGAGGTCTAGCAGCAATCCATTGGC
GCAATTTGCAACCTGGACTGGACAAGGTCAAACTTCTTGGTGCAGGTGCTGGATGATTCC
GATGATGCTACCACTTCCGCGCTCATCAAGGAGGAGGTCGAGAAATGGCAGCGGGAGGGC
GTGCGCATAGTATACAGGCACCGGGTGATCCGTGACGGCTACAAGGCCGGAAACCTCAAA
TCAGCAATGAACTGCAGCTATGTGAAGGACTATGAATATGATGTCATCTTCGATGCCGAT
TTCCAGCCACAGGCGGATTTCCTGAAGCGCGCCATGCCCCATTTCAAGGGGAAGGACGAT
GTTGGGTTGGTTCAGGCAAGATGGTCTTTCGTGAACAACGATGAGAACTTGTTGACCAGA
CTACAGAACGTAAACCTGTGCTTCCACTTCGAGGTGGAGCAGCAAGTGAACGGAGCGTTT
CTCAACTTCTTTGGGTTCAACGGGACTGCCGGAGTGTGGAGAATCAAGGCACTTGAGGAT
TCCGGTGGTTGGATGGAGCGCACGACGGTCGAAGACATGGACATTGCTGTCCGAGCACAT
CTCAAGGGATGGAAGTTCCTCTACCTGAATGATGTTGAGTGTCAATGTGAGTTGCCAGAA
TCGTATGAAGCATACAGAAAGCAGCAGCACAGGTGGCACTCAGGTCCCATGCAGCTGTTT
AGACTCTGCTTTGTGGACATCATAAAATCCAAGATTGGATTCTGGAAGAAGTGCAACCTG
ATATTCCTATTCTTCCTCCTCCGCAAGCTCATCCTGCCATTCTACTCCTTCACCCTCTTC
TGCGTGATCCTTCCCATGACAATGTTCGTTCCAGAGGCCGAACTTCCAGCATGGGTCGTA
TGCTACATTCCAGCAGCAATGTCCATCATGAGCATCCTCCCATCCCCAAAGTCCTTCCCG
TTCATCGTCCCGTACCTCCTCTTCGAGAACACCATGTCTGTGACCAAGTTCAACGCCATG
ATCTCGGGCCTGTTCCAGCTCGGGAGCGCCTACGAGTGGGTGGTCACCAAGAAGTCGGGC
CGCTCCTCCGAGGGCGACCTCGTGGCCCTCGTCGAGAAGCACACCGTGCAGCAGCAGCAG
AGAGTCGGGTCGGCGCCGGACCTTGCAGGGCTGGCCAAGGACTCGTCGCTTCCCAAAAAG
GATGCCAAGAAGAAGCAGAAGCACAACAGGATCTACCGGAAGGAGCTGGCGCTGTCGTTC
CTCCTGCTGACGGCGGCGGCGCGCAGCGTGCTGTCGGCCCAGGGCATCCACTTCTACTTC
CTCCTGTTCCAGGGCGTCTCGTTCCTGGTCATGGGCCTCGACCTGATCGGCGAGCAAGTG
GAGTGATGCCATGGCGGCAGCGACGACCGGAGGTTCTCTTTATTTTTTTCAGTCTGAAGA
TACTACTACTTTGCGAGCATCAAAGGAGCCCTCTGTAAAGGGAGGCAACGTTTGGTGCTC
GGTGCTTACAGGAGGAAGCTCGCTCGCTCCATCGATCTCTCTGATCCCTGCTGCTCCAGG
GGTCCGAGGCATACAACTGAACTGTGGAGAATGTAGATAGATATAGCTTTGGATCATCAT
CATCATCATCATCATCAAAATGCCTGTGAGATGGTTTTATTCTTTCAGGTCGTCGAAATT
CTTTTGTAAGAAACAAGAAAATCAAAACCCTTTGGACGGGTGGGTGCCTAGATGACGGGG
TGGGTGGTCCTTTGTTCCTTGTTGACAGACTTTACCTTCAAATGAAGATAATACTTGTTT
TCGCCTTGTACTTTTTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15154 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g43530.1	689	protein\|CSLC7 - cellulose synthase-like family C, expressed
Brachypodium v1_2	Bradi2g20141.1	688
Arabidopsis v10	AT4G07960.1	699	\| Symbols: ATCSLC12, CSLC12 \| Cellulose-synthase-like C12 \| chr4:4802628-4805114 REVERSE LENGTH=699