barSeed - Barley Seed Development Database

Probe CUST_22685_PI390587928

Source Contig U35_15155

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22685_PI390587928	Hv_44K_v2	AGTGAACCCCTGTAAACATGGACACGATAGATTTTAAAGGCAGTGATTGGCACCAAAAAA	593	GeneList: darkslateblue MasterList: Transferase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.803	2.089	1.307	0.757	0.335	0.500
Raw	2344.587	4264.737	2264.127	2085.987	328.452	531.220

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356879	2464	3e-22	2408 - 2463	100	56 / 56	plus	ABC07539 ABC07541 ABC07542 ABC08486
MLOC	AK356388	2867	9e-22	2309 - 2363	100	55 / 55	plus	ABC07539 ABC07541 ABC07542 ABC08486
MLOC	MLOC_78240.1	348	9e-22	74 - 128	100	55 / 55	minus	ABC07539 ABC07541 ABC07542
JLOC1	JLOC1_52147.1	1852	5e-22	1730 - 1784	100	55 / 55	plus
Harvest21	ABC07539	559	3e-25	489 - 548	100	60 / 60	plus	ABC07539
Harvest21	ABC07542	770	2e-22	158 - 212	100	55 / 55	minus	ABC07542
Harvest35	U35_15155	805	3e-25	594 - 653	100	60 / 60	plus
Harvest35	U35_15157	1642	2e-21	1574 - 1631	97	58 / 60	plus

Contig Sequence (805 bp)

>U35_15155 805 Hv_44K_v2
GCTCATACTACCATTCTACTCCTTCACGCTCTTCTGCATCATCCTCCCGATGACGATGTT
TGTGCCCGAAGCCGAGCTCCCGGACTGGGTCGTATGCTACATACCTGCCCTCATGTCCCT
GCTCAACATCCTGCCGTCCCCAAAGTCGTTCCCATTCATCATCCCATACCTGCTCTTTGA
GAACACCATGTCGGTGACCAAGTTCAACGCCATGATCTCGGGCCTGTTCCAGCTCGGGAG
CGCTTACGAGTGGGTGGTGACCAAGAAGTCGGGCCGGTCGTCGGAGGGCGACCTCATCTC
CCTGGCGGCGGTGGCGGTGCCGCCCAAGGAGCTGCGGCACCACCAGAAGACCGGATCGGC
GCCGAACCTGGACGCGTTGCTGGTGTGGAAGGAGCAGCCGAGCCCGAAGAAGGAAGGGAA
GAAGCAGAAGAAGCACAACCGGATATACAAGAAGGAGCTGGCGCTGTCGCTGCTCCTGCT
GACGGCCGCCGCTCGCAGCCTGCTGACGAAACAGGGTATACACTTCTACTTCCTGCTGTT
CCAGGGCATCTCCTTCTTGTTAGTAGGCCTCGACCTCATAGGCGAGCAGGTCGAGTGAAC
CCCTGTAAACATGGACACGATAGATTTTAAAGGCAGTGATTGGCACCAAAAAAAAAAAAA
AAAAACTGACGGGCGCGGCGCCGCGCCGGGGTTTGAAATGGTTTATGGGGTTCACCACGT
CGCCGCCGCCCGGCCATGGCATTGCGCGAGCACGGTCGGAGCGGACGAGATCGATGGAGA
GGGAGGGTTGGTTCTGAGCCCGTTA

Homology of Contig U35_15155 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g56060.1	458	9e-92	protein\|CSLC9 - cellulose synthase-like family C, expressed
Brachypodium v1_2	Bradi1g07277.1	701	3e-91
Arabidopsis v10	AT4G07960.1	699	7e-78	\| Symbols: ATCSLC12, CSLC12 \| Cellulose-synthase-like C12 \| chr4:4802628-4805114 REVERSE LENGTH=699