barSeed - Barley Seed Development Database

Probe CUST_22684_PI390587928

Source Contig U35_15156

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22684_PI390587928	Hv_44K_v2	ACAAGCTATCTGTGACTTGGCTTTGCGCTTTGGTGAAGGTGATGAAGAATCAATGTCACG	483	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.449	0.568	1.204	1.892	0.884	1.250
Raw	1418.277	2830.252	5245.563	13542.270	2121.530	3292.647

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74560.1	1304	2e-24	560 - 619	100	60 / 60	minus	ABC03004 ABC03005
JLOC1	JLOC1_49694.1	1586	8e-25	686 - 745	100	60 / 60	plus
Harvest21	ABC03004	1180	3e-25	485 - 544	100	60 / 60	plus	ABC03004
Harvest35	U35_15156	1185	3e-25	484 - 543	100	60 / 60	plus

Contig Sequence (1185 bp)

>U35_15156 1185 Hv_44K_v2
GAGGAGAAAATTCCGTGAGAAACTCGCCGCCGTCTCCTCTCCTCTCTACTAGTACTTGTT
TCTCAAGAAGGAACGCTACCAAGCACCCACCCCGTGTAGAAATAGAAACAAGGGCTTCAA
ACTCCGATCCGCTTCCGCCGACACGATGTTTCTCACGAGGACGGAGTACGACCGTGGGGT
CAACACCTTCTCCCCGGAGGGGCGGCTGTTCCAGGTCGAGTACGCCATCGAGGCCATCAA
GTTGGGCTCCACTGCCATCGGCTTGATGACTAAGTATGGTGTTGTCCTGGCTGTTGAGAA
ACGCGTCACCTCACCGCTGCTGGAACCTAGCAGTGTGGAGAAAATCATGGAAATTGATGA
GCATGTTGGCTGTGCAATGAGTGGCCTTATTGCTGACGCCAGAACACTTGTTGAGCATGC
TCGTGTCGAGACTCAGAATCATAGGTTCTCATATGGGGAGCCAATGACAGTAGAATCTAC
CACACAAGCTATCTGTGACTTGGCTTTGCGCTTTGGTGAAGGTGATGAAGAATCAATGTC
ACGGCCGTTTGGAGTCTCTCTCCTTATTGCTGGTCATGATGAAAATGGACCCAGCTTGTA
CTACACGGACCCATCTGGGACCTTCTGGCAGTGCAATGCCAAGGCAATTGGGTCGGGCTC
TGAAGGAGCTGATAGCTCATTACAAGAGCAGTACAACAAGGAATTGACAATCGCTGAGGC
AGAGACCATAGCCCTTTCTATCCTGAAGCAGGTTATGGAAGAAAAGGTGACCCCAAACAA
TGTTGACATTGCGAATGTCTCCCCCAGCTACCACCTCTACACTCCTGCAGAGGTTGAAGC
GGTCATCGCGAGGTTGTGAAGGATTGCCACTTTGTGAGACAGCCTCTTGAAGGGATAGTA
GTGCCTGCCAGGTCGTTGCATCTGAATTCTCATATGCCAGTCCAGTCATTCGTTTGTTTA
CAGTAGCACTAAGACGTTGTACCACCAAAAAGAATTATTTTTCAGCATTCCAGCCAGCGC
GTAGGTATCACCGGCTGCATTTGTGTGTGTTTGGTTCGTAAAACATCTCTACTACTAAAG
GCGACTTGGTGATGGTTTAAAAAAAAAAAAAATTGGTGTTTGTACTCCATCGGTTCCTAA
ATATAAGACCTTTTAGAGTTTTCACTAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15156 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g40140.1	238	2e-160	protein\|peptidase, T1 family, putative, expressed
Brachypodium v1_2	Bradi4g13740.2	238	3e-162
Arabidopsis v10	AT1G53850.1	237	1e-155	\| Symbols: PAE1, ATPAE1 \| 20S proteasome alpha subunit E1 \| chr1:20104131-20105792 REVERSE LENGTH=237