barSeed - Barley Seed Development Database

Probe CUST_22683_PI390587928

Source Contig U35_15157

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22683_PI390587928	Hv_44K_v2	GAAGAAATTCAACTTGATCTTTCTTTTCTTCCTACTCCGGAAGCTCATACTACCATTCTA	938	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.340	2.126	2.006	1.192	0.608	0.490
Raw	21.534	57.117	42.676	38.849	6.473	4.953

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356388	2867	2e-24	1674 - 1733	100	60 / 60	plus	ABC07539 ABC07541 ABC07542 ABC08486
MLOC	AK356879	2464	2e-24	1773 - 1832	100	60 / 60	plus	ABC07539 ABC07541 ABC07542 ABC08486
JLOC1	JLOC1_52147.1	1852	8e-25	1158 - 1217	100	60 / 60	plus
Harvest21	ABC07541	1642	6e-22	970 - 1029	97	58 / 60	plus	ABC07541
Harvest35	U35_15157	1642	3e-25	939 - 998	100	60 / 60	plus

Contig Sequence (1642 bp)

>U35_15157 1642 Hv_44K_v2
GCGCCGCTGCTCCAGTTCCTCACCGACGCCTGCGTCGTGCTCTTCCTCATCCAGAGTGCC
GACCGCCTCATCCAGTGCCTCGGCAGCTTCTATATCACCGTCAAGCGCATCAAGCCCAGG
CTCAAGTCCCCGGTGCTGCCGGACGCCGAGGACCCCGACGCCGGCTACTACCCCATGGTG
CTCGTCCAGATACCAATGTGCAACGAGAAAGAGGTGTATCAGCAATCAATCGCGGCCGTC
TGCAACCTCGATTGGCCGAGGTCCAACTTCTTGGTTCAGGTTTTGGACGACTCCGACGAC
CCGACCACGCAGTCGCTCATCAGGGAGGAGGTCGCGAAGTGGCAGCAGACCGGGGCTCGG
ATTCTGTACCGGCACCGCGTGCTCAGGGATGGGTACAAGGCCGGGAACCTCAAGTCCGCC
ATGGGCTGCAGCTACGTCAAGGATTACGAATTTGTTGCCATCTTTGACGCTGACTTCCAA
CCAAACCCAGACTTTTTAAAGCGCACCGTGCCACATTTCAAGGACAACGATGAACTGGGG
CTGGTGCAAGCCAGATGGTCGTTTGTGAACAAGGATGAGAACTTATTGACTCGGTTGCAG
AACATCAATCTTTGCTTCCACTTTGAGGTGGAGCAGCAGGTGAATGGTGTGTTCCTAAAC
TTCTTTGGGTTTAATGGCACCGCCGGCGTGTGGAGGATCAAGGCGTTGGAGGAGTCCGGC
GGGTGGATGGAACGGACAACGGTGGAGGATATGGACATTGCAGTTCGGGCGCATCTCCAT
GGTTGGAAGTTTATCTTCCTGAACGACGTCGAGTGCCAATGCGAATTACCCGAGTCATAC
GAGGCTTACAGGAAGCAGCAACATCGGTGGCATTCCGGTCCAATGCAGCTATTCAGGCTT
TGCATACCGGACATCATCAAGTCCAAGATTTCAGTGTGGAAGAAATTCAACTTGATCTTT
CTTTTCTTCCTACTCCGGAAGCTCATACTACCATTCTACTCCTTCACGCTCTTCTGCATC
ATCCTCCCGATGACGATGTTTGTGCCCGAAGCCGAGCTCCCAGACTGGGTCGTATGCTAC
ATACCTGCCCTCATGTCCCTGCTCAACATCCTGCCGTCACCAAAGTCGTTCCCATTCATC
ATCCCATACCTGCTCTTCGAGAACACCATGTCGGTGACCAAGTTCAACGCCATGATCTCG
GGCCTGTTCCAGCTCGGGAGCGCCTACGAGTGGGTGGTGACCAAGAAGTCGGGCCGGTCG
TCGGAGGGCGACCTCATCTCCCTGGCGGCGGTGGCGGTGCCGCCCAAGGAGCTGCGGCAC
CACCAGAAGACCGGGTCGGCCCCGAACCTGGACGCGTTGGTGGTGTCAAAGGAGCAGCCG
AGCCCGAAGAAGGAAGGGAAGAAGCAGAAGAAGCACAACCGGATATACAAGAAAGAGCTG
GCGCTGTCGCTGCTCCTGCTGACGGCCGCCGCTCGCAGCCTGCTGACGAAACAGGGTATA
CACTTCTACTTCCTGCTGTTCCAGGGCATCTCTTTCTTGTTAGTAGGCCTTGACCTCATA
GGCGAGCAGGTCGAGTGAACCCCTGTAAACATGGACACGATAGATTTAAAGGCAGTGATG
GCACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15157 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g03260.1	687	protein\|CSLC10 - cellulose synthase-like family C, expressed
Brachypodium v1_2	Bradi1g07277.1	701
Arabidopsis v10	AT4G07960.1	699	\| Symbols: ATCSLC12, CSLC12 \| Cellulose-synthase-like C12 \| chr4:4802628-4805114 REVERSE LENGTH=699