barSeed - Barley Seed Development Database

Probe CUST_22682_PI390587928

Source Contig U35_15158

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22682_PI390587928	Hv_44K_v2	AGGATTTGTGGCAATAGCATGCAGTATTTGAGTAACAACTGTCGTCTGCACCGTAAAAAA	1054	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.098	2.398	1.200	0.867	0.396	0.612
Raw	781.371	1334.599	611.913	689.168	111.170	188.934

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370848	1117	9e-22	1030 - 1084	100	55 / 55	plus	ABC03004 ABC03005
JLOC1	JLOC1_27201.1	1295	5e-22	1163 - 1217	100	55 / 55	plus
Harvest35	U35_15158	1125	3e-25	1055 - 1114	100	60 / 60	plus

Contig Sequence (1125 bp)

>U35_15158 1125 Hv_44K_v2
GGCAGAACCTTCCTCTCGTCTCCCGCAAGGCCACAAACCCATCTTCCCATAGCCCAAGCA
AACCACGCGCCACCATGTTCCTCACGAGGACGGAGTACGACCGCGGCGTGAACACCTTCT
CCCCGGAGGGGCGGCTGTTCCAGGTCGAGTACGCCATCGAGGCCATCAAGTTGGGATCTA
CTGCAATCGGGTTGAAGACGAAGGATGGGGTTGTTCTTGCTGTGGAGAAACGTGTGACGT
CTCCATTGCTGGAACCTAGCAGTGTTGAGAAAATTATGGAAATTGATGAGCATGTAGGCT
GTGCCATGAGTGGCCTTATTGCTGATGCAAGAACATTGGTTGAGCATGCTCGTGTGGAGA
CCCAAAACCATAGATTCTCATATGGGGAACCGTTGACAGTTGAGTCCACCACACAAGCTA
TTTGCGATCTAGCTCTTCGCTTTGGAGAAGGTGAAGAAGAGTCTATGTCACGACCTTTTG
GAGTTTCTCTTCTTATTGCTGGTCATGATGAAAATGGGCCGAGCTTGTACTACACTGACC
CATCTGGAACCTTTTGGCAGTGCAATGCTAAGGCAATAGGGTCAGGCTCTGAAGGTGCCG
ATAGTTCCTTACAGGAGCAGTTTAACAAGGAGCTGGCCCTTCAGGAGGCTGAAACCATTG
CTCTATCTATCCTGAAACAGGTTATGGAAGAAAAGGTGACTCCAACTAATGTAGACATCG
CCAAGGTCGCACCGAACTACCACCTTTACACCCCTGCAGAGGTCGAAGCAGTCATAGCAC
GATTGTGAAAAGCGGAAATCTTTGTCGAATGTCAATCAGGATTCATATGTTCCTTCTGCT
GTGTGTCTGACATCCTGATGCCTTTAATTTAGCAGAAGCACAATTGCTCGATGATATGGA
CACTGATGTTTGCCTCTTTTGGTTTGATTATGTGGTGTTGTAAAATTCAAAAAATAATAA
TTATTATGTGGTGTTGACAAGAAGGTTTAGAGGCCTAGATGTTGTTGCCTTCTCACGTGC
CGGGAAGGAGATTGTACACCTTTTTTTTATACGAAGGATTTGTGGCAATAGCATGCAGTA
TTTGAGTAACAACTGTCGTCTGCACCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15158 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g40140.1	238	5e-162	protein\|peptidase, T1 family, putative, expressed
Brachypodium v1_2	Bradi4g07060.1	238	3e-163
Arabidopsis v10	AT1G53850.1	237	6e-159	\| Symbols: PAE1, ATPAE1 \| 20S proteasome alpha subunit E1 \| chr1:20104131-20105792 REVERSE LENGTH=237