barSeed - Barley Seed Development Database

Probe CUST_22668_PI390587928

Source Contig U35_26187

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22668_PI390587928	Hv_44K_v2	TGCAACTAAGAAGTCTGTGGATTGATAATATTAGTGTCGCTGAGTGTGCAAATCTGTTTG	275	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16581.1	3436	2e-24	936 - 995	100	60 / 60	minus	ABC12946
JLOC1	JLOC1_11425.2	3461	8e-25	2469 - 2528	100	60 / 60	plus
JLOC1	JLOC1_11425.1	3286	8e-25	2294 - 2353	100	60 / 60	plus
Harvest21	ABC22096	377	3e-25	276 - 335	100	60 / 60	plus
Harvest35	U35_26187	378	3e-25	276 - 335	100	60 / 60	plus

Contig Sequence (378 bp)

>U35_26187 378 Hv_44K_v2
CAAGGTCAAGTCACTTCCGGACTCTGTTGAGCATTTGTCTCGCCTCCACACCCTCGACAT
CAAGCAAACCAAAATAGAGAAGCTACCACGAGGGCTCGTCAAGATCAAGAAGCTGCAACA
TCTTTTAGCCGATAGATATGTTGATGAGAAGCAGGTGGAGTTTCGGTACTTCAATGGAAT
GCAAGCACCCAAAGAGTTGTCCAACTTGGACGAACTGCAAACTCTTGAGACCGTGGAATC
CAGTAATGACTTGCCTGAGCAGCTGAAGAAACTGATGCAACTAAGAAGTCTGTGGATTGA
TAATATTAGTGTCGCTGAGTGTGCAAATCTGTTTGCTACCCTTTCAAATATGCCACTTCT
TTCAAGCTTGCTTCTTTG

Homology of Contig U35_26187 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g11990.1	858	2e-56	protein\|NB-ARC domain containing protein, expressed
Brachypodium v1_2	Bradi4g21890.1	909	6e-59
Arabidopsis v10	None