barSeed - Barley Seed Development Database

Probe CUST_22665_PI390587928

Source Contig U35_38160

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22665_PI390587928	Hv_44K_v2	TACTTTGTCTCACCAACTATTTGAAAGGGGCTTAATCTGCTGGGTACAGGACCAATTGAC	643	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.165	1.595	1.671	1.221	0.524	0.387
Raw	145.063	318.022	281.393	326.379	49.128	38.769

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC34013	703	3e-25	644 - 703	100	60 / 60	plus
Harvest35	U35_38160	703	3e-25	644 - 703	100	60 / 60	plus

Contig Sequence (703 bp)

>U35_38160 703 Hv_44K_v2
GGTCATGTGCTTGGCCAAATGCCAGACCAACTTGGTCCTCTACGTCTACTCTTCATCAGG
TCCCCATGCCGGGCAATGGCGCACCGTCACATTTGATGGTTGGACCGCTCTCCTCGCGGG
AGCCAGTGACCATGCGCAATCCTCTGCTGCGTTCGGAAAGCGCTACTACGCGCACGGGTC
CTTCTGCTGGGCGATATGTGCCATCAACAAGTTGCTCTTGCTCGACACGGCTACCATGGA
GTTCTCCTCCGTCAACCTTGATCCTGACCTCATGAATCACGAGGTGGCCTTTGTGGAAGC
AAGCGAAGGGAGGCTTGGGATGTTCGCTCTCAGCCAACTTCCCATACACTTCGTGCCTCG
CCTCCGGTATTCCATTTTGGTTACCACTGGGGATGATCCAGGGCAGTGGCAAAAGAAAAA
GGGAGTCACATTGTCCCATGATTACTGCTACCAGATCGTTGGTGTAGCTGGGGGGTACCT
GCTGCTATATGTGGTTACAGACGACCCGGATTTGTTCCCTCCGAATAAAGTGCCTGACGC
GGGCTGCTTTTCACTGAATCTTCGCACTATGGATCTTGAGCGCTTCTCTCGGGGTAGGGA
CATAATATCAGCGCGGGACCAACTGTATTCGGGCTTCCCGCCGTACTTTGTCTCACCAAC
TATTTGAAAGGGGCTTAATCTGCTGGGTACAGGACCAATTGAC

Homology of Contig U35_38160 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None