barSeed - Barley Seed Development Database

Probe CUST_22663_PI390587928

Source Contig U35_38162

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22663_PI390587928	Hv_44K_v2	CATATATCGTGCTTATAGCTGAAATACTGTGAATGATGCCACGTTGTGAATTATGCATAA	503	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250375.1	2076	7e-23	706 - 765	98	59 / 60	plus	ABC34016
MLOC	AK373536	3737	7e-23	634 - 693	98	59 / 60	plus	ABC34016
MLOC	MLOC_54644.1	407	7e-23	203 - 262	98	59 / 60	minus	ABC34016
MLOC	AK359178	816	3e-21	732 - 791	97	58 / 60	plus	ABC04805 ABC34016
JLOC1	JLOC1_35178.1	393	4e-23	191 - 250	98	59 / 60	minus
Harvest21	ABC34016	606	3e-25	504 - 563	100	60 / 60	plus	ABC34016
Harvest35	U35_38162	606	3e-25	504 - 563	100	60 / 60	plus

Contig Sequence (606 bp)

>U35_38162 606 Hv_44K_v2
CGCGCGAGGAGAGGCGCCGATATGTTTGCGACGGCGGCGCGGTGGGCGGCGAAGAAGGGG
AAGCCCAAGATGGCGCCCATCGAGCTCACGACGGCGCCGGAGCAGGCGCAGTCCATCACA
CGCACCATCTTCGACGTCGTCAAGGAGCACGGCCCCCTCACCATCTCTGACGTCTGGGAG
CACGTCAAGAACTTGCGGTGTGTTAAATTTCCTTCAGGACGTAGGGCTGAGGGGTTTGAC
AAGCAAGAGGCAGATGAAGATCATGCTGCGGTGGATGAGGGAGAAGCAGAAGCTCAGGCT
CATCTGCGACCATGACGGGCCTCACAAGCAGTTCCTCTACACGACATGGTTCACCAACCC
CAAGAATGCGCCGCAGAGGCCCAACAGGGAGCTCAACAGGGAGCAGCCCAAGCCATGAAC
GCACTCATCTTGACCGATGTAGGGCATATTTGGCTTACACCTTGTTAATGATTTTTCCTG
GATCTGTAGACAAAGCTGTTAATCATATATCGTGCTTATAGCTGAAATACTGTGAATGAT
GCCACGTTGTGAATTATGCATAAATAAATAACCCAAAACAGTTTGTTTTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_38162 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g27140.1	133	5e-56	protein\|expressed protein
Brachypodium v1_2	Bradi3g21898.1	123	4e-58
Arabidopsis v10	None