barSeed - Barley Seed Development Database

Probe CUST_22645_PI390587928

Source Contig U35_40488

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22645_PI390587928	Hv_44K_v2	CATAAGCCCCATGAAGATCTGCTGAAAGTAAGTCTATCCTTGAATCTTTGAGGAGGAGGG	77	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.348	0.644	1.381	1.841	0.796	0.952
Raw	19.365	60.522	104.685	223.081	33.195	44.506

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_40488	613	3e-25	78 - 137	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_40488 613 Hv_44K_v2
TCCAGGTTTAGGAGACATCTCGTACTTTCAGCAGAATACTTCAGGTACGAGATGTCTCCA
GGTTTAGGAGGGTTCACCATAAGCCCCATGAAGATCTGCTGAAAGTAAGTCTATCCTTGA
ATCTTTGAGGAGGAGGGCACAAATAATGACAGACGGTTTCAATAGTTGCCGCAATGTTGT
CTGCAATTTCACAGAAGGAGCTATGTATTCCTTCCCGCAAATACGCCTGCCGCAAAGAGC
TATGGATGTAGCAAAAAGCGCTGGCAAAGAGCCCGATGTTTACTACTGCCTCAAGCTTCT
GGAAGCCACTGGAATATCCACTGTTCCAGGCTCAGGTTTTGGTCAGAAAGAAGGGGTGTT
CCATCTGAGGACAACGATCCTGCCTGCGGAGGAGGACATGCCGGCAATCATGTCGAGCTT
CAAGAAGTTCAACGACTCGTTCATGGACCAGTACCAAGACCACTCGAGGCTGTGAAGAGA
GAATAAAAACCACCGCGTCTACATATTAATATAATGCTGCTCTTTTCTACCAGCAATTGA
AGTTGATTAATTAGCTGTGAGCTGTAACTATGGTGAAGAAAACTGGTTGCTATGCTTGAT
ATGTATAGGGGGG

Homology of Contig U35_40488 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g01760.1	486	3e-71	protein\|aminotransferase, classes I and II, domain containing protein, expressed
Brachypodium v1_2	Bradi1g59220.1	480	2e-76
Arabidopsis v10	AT1G70580.1	481	9e-66	\| Symbols: AOAT2, GGT2 \| alanine-2-oxoglutarate aminotransferase 2 \| chr1:26613222-26615845 FORWARD LENGTH=481