barSeed - Barley Seed Development Database

Probe CUST_22644_PI390587928

Source Contig U35_26195

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22644_PI390587928	Hv_44K_v2	TCAAGGCGGAAATCCCGAAATATGGCTGGGCATAAGCTTGAGGCAGCTATCAAAGAATTT	415	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63770.2	1480	2e-24	508 - 567	100	60 / 60	plus	None
MLOC	MLOC_63770.4	1520	2e-24	488 - 547	100	60 / 60	plus	None
JLOC1	JLOC1_41809.2	1591	8e-25	488 - 547	100	60 / 60	plus
Harvest21	ABC22292	569	3e-25	416 - 475	100	60 / 60	plus
Harvest35	U35_26195	569	3e-25	416 - 475	100	60 / 60	plus

Contig Sequence (569 bp)

>U35_26195 569 Hv_44K_v2
GCCAGGATCAAACCCTATCCCCCTCTTCCTCTCCGCCCTTCGGTCTTGGCGGCTCGGTGC
TTTGCGTCTCTCTCTCAGTCCCAGTCGCCGGCGCGGCCGCAGAATCCGAGATTAGGGGCT
GCCGTCGACAACAAGAAGGTGGCGATGATGGCTTGCCGGCTGCGGTTCCACCAGCTTAGG
CTGGTTGGAGTCCGGCCCACCTGCTGCTCTCCGTCCAGGCAGTTCGCGGCCGTCAAATCC
CAGAAAATCCAGCCCCCCAAGAAGAAAAAGCGATTGGATGAGGCGTGCCTTGAGAGGTAT
CAACAATACAGTAGAACGTACATCCAGTCATGGATTCTTCAGGGTAAGGTCCATGTGAAT
GGAAGAGTCGTGAACAAAGCTGGAACGCAAGTATCTGACAAGTCGGTCATAGAAATCAAG
GCGGAAATCCCGAAATATGGCTGGGCATAAGCTTGAGGCAGCTATCAAAGAATTTGGCGT
GGACTGTGATGGAAAGGTAGCCCTTGATTCAGGGCTGTCTACAGGTGGTTTTACTGACTG
CTTACTTCAGCATGGGGCATCACATGTGT

Homology of Contig U35_26195 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g14230.1	296	2e-58	protein\|uncharacterized protein yqxC, putative, expressed
Brachypodium v1_2	Bradi4g20930.1	300	4e-63
Arabidopsis v10	None