barSeed - Barley Seed Development Database

Probe CUST_22625_PI390587928

Source Contig U35_38181

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22625_PI390587928	Hv_44K_v2	ACCACAAGTTACATGCACAGTAAATGTTATGAATCTTGTGAGAAATATCACTAAGAGGAC	486	GeneList: grey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.790	1.510	1.011	0.624	1.026	1.063
Raw	3.888	14.846	9.381	7.503	3.510	4.628

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC34039	568	3e-25	487 - 546	100	60 / 60	plus
Harvest35	U35_38181	568	3e-25	487 - 546	100	60 / 60	plus

Contig Sequence (568 bp)

>U35_38181 568 Hv_44K_v2
GCAATGGTATGTGCTATCCAAGACCCTTGCCGAGGAGGCTGCATGGAAGTTCGCAAAAGA
TAATGGATTAGAAATAATTACAATAAATCCAACAATGGTCATTGGTCCCCTGTTGCAGCC
TACACTGAATACTAGTGCAGAAGCAATATTGAAGTTTATAAATGGTATGTCCGTATGTGG
TTTGATAATTAACTTTTTCTAGGTTAACTCTATGCATGTAAGGTAGAGCTTTGCTATGCC
CTGCACCCATTTTGCATTTGTCATTTGATTGAGAGAATATCCAAGCTCAGTATATTCCAA
TTTCTATTAGACAGCACAATCTCTGCAAACAAGCTCAAGATATTTCAAGCGATGTTGAAT
TATGTTTCTTTCATTTCCTTTTGTGTGTGTGTTTTGGGCACTGGCAAAAGCACTGTGAGA
TATTGCCATATTGGAATGATTCTACTATTTCTTTGTTTATCTAGCTAATAGTTTGTGCAT
CCTAAAACCACAAGTTACATGCACAGTAAATGTTATGAATCTTGTGAGAAATATCACTAA
GAGGACTGTGTTTAATTGGACATTTTAT

Homology of Contig U35_38181 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None