barSeed - Barley Seed Development Database

Probe CUST_22622_PI390587928

Source Contig U35_38185

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22622_PI390587928	Hv_44K_v2	AGTATTTTACATACAGCTTGGAGTCAAGGATCAAGCCTAGGTACCATGAGAGTGGCAAGC	653	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.152	1.217	1.566	1.386	0.592	0.583
Raw	46.104	74.731	87.762	125.156	18.657	19.266

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362700	2171	3e-22	1374 - 1432	98	59 / 60	plus	None
MLOC	MLOC_69286.2	6368	3e-22	5220 - 5278	98	59 / 60	minus	None
MLOC	MLOC_69286.1	6462	3e-22	5314 - 5372	98	59 / 60	minus	None
MLOC	MLOC_69286.3	1234	3e-22	212 - 270	98	59 / 60	minus	None
JLOC1	JLOC1_45898.1	1802	1e-22	1051 - 1109	98	59 / 60	plus
Harvest21	ABC34045	719	3e-25	654 - 713	100	60 / 60	plus
Harvest35	U35_38185	719	3e-25	654 - 713	100	60 / 60	plus

Contig Sequence (719 bp)

>U35_38185 719 Hv_44K_v2
GGAGCGCTACCCCGACGTCCTCGGCCTCAAGCCCGACGGCACCATCAGCACCTCCGTCGC
CTACCTCGTCGGCATCCTCGGCGTCGCGCCGCGTGACATTGGCCCCATGGTGACGCACTA
TCCCTTCTTCCTTAGCATGCGTGTTGGCACCACGATCAAGCCCTTCTGCGATTACATCAC
GTCTCTTGGGCTGCCGATGAGGATTCTGGCTAGGATTATTGAGAAGCGGCCATACATTCT
TGGATATGATCTTGAGGAGACGGTCAAACCAAATGTCGAGGCATTACTCAGCTTCGGCAT
TCGGAAGGAGGTGCTGCCACTCATGATTGCGCAGTACCCATCCATCCTTGGGTTGCCTCT
GAAGGTGAAGCTAGCGGCACAGCAGTACTTCTTCAACTTGAAGCTCAAAATTGACCCTGA
TGGGTTTGCTCGCGCTGTTGAGAAGTTGCCACAGCTTGTGAGCTTGCATCAGAATGTGAT
ACTTAAGCCTGTGGAGTTCCTTCGCGGACGGGGAATCACCGATGATGATATTGGGCGCAT
GTTGATCCGGTGCCCACAGATTCTTTTGCTGCGGAATGAGCTCATGAAGAACAGTTTTTA
CTTCTTCAAGAGCGAGCTGAAGCGGCCAATAAGTGAACTTCTGGAGTACCCAGAGTATTT
TACATACAGCTTGGAGTCAAGGATCAAGCCTAGGTACCATGAGAGTGGCAAGCAAGGGG

Homology of Contig U35_38185 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54200.1	575	5e-144	protein\|mitochondrial transcription termination factor family protein, putative, expressed
Brachypodium v1_2	Bradi3g60150.1	497	5e-156
Arabidopsis v10	AT2G44020.1	507	1e-115	Mitochondrial transcription termination factor family protein \| chr2:18217737-18219260 REVERSE LENGTH=507