barSeed - Barley Seed Development Database

Probe CUST_22621_PI390587928

Source Contig U35_38186

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22621_PI390587928	Hv_44K_v2	CGTCGCCTTGAGTAAGAACTATTTGATGCTTTATCCTAGTTGTTGTAAGAACTATTTGAT	570	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.237	1.288	1.298	0.941	0.270	0.276
Raw	284.097	454.101	413.260	472.932	46.390	53.456

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47588.1	452	7e-23	380 - 439	98	59 / 60	plus	None
MLOC	AK370679	2463	3e-21	2365 - 2424	97	58 / 60	plus	ABC17168 ABC45971
JLOC1	JLOC1_30666.1	413	4e-23	340 - 399	98	59 / 60	plus
Harvest21	ABC34046	664	3e-25	571 - 630	100	60 / 60	plus
Harvest35	U35_38186	664	3e-25	571 - 630	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_38186 664 Hv_44K_v2
GACAAACGATGCACACATTATGTTCAAGGAAATGGATCTTAAAAAGAAGAAGCTTTTACA
TTAATGCATTGCTATGTCGAGCTTTCGAAGTATCCAAAGTGGCAGACAAAAGAACTTGAA
ACTTCTCGTAAGAAACAAAAGAAGACCGTTGGTGCAAGTCCGGGCACATCCACCAATGAT
CTAGCTGATGCATCCTCGGTACGCACTGATGCTACCTCAATACACAGGGATGCTCTTGAA
CATGAGGAAAGACCTGATGGTGTGAAGAAGGACAAATTGCGGAAAGGTAAAGCTGATGAC
AGTGCTTGCAAGTTGTCATTAGAAACTGTGTGGGCAGCAAAGCAAGAGAAGGATGACATC
AAAGAGGCGGCAAAAAATGCTCGCTATGCACAGCAATTTGAATTGCGAAAAGAGGAGATT
GCACTGAAAAAGAAGGAGGATGCACGAAACGAGAGGGAGGATGCACGGAGACAGTTTGAA
TTAGATGTGAGGGTCATGCTCATAGACACTAGTGGTATGACTGATATGCAAAAGCAGTTC
TACCAAGCTAAGCAGAATGAGATCCTTGCTCGTCGCCTTGAGTAAGAACTATTTGATGCT
TTATCCTAGTTGTTGTAAGAACTATTTGATGCTTTATCCTAGTTGTAAGAACTATTTGAT
GCTT

Homology of Contig U35_38186 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None