barSeed - Barley Seed Development Database

Probe CUST_22608_PI390587928

Source Contig U35_9101

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22608_PI390587928	Hv_44K_v2	CCAACGATCAACTAGATCATCATCATGATGTATATATATGTGCTTTGCATTAACACGCAT	544	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58957.1	1883	2e-24	1731 - 1790	100	60 / 60	plus	ABC19112
MLOC	MLOC_58957.2	1412	2e-24	1260 - 1319	100	60 / 60	plus	ABC19112
JLOC1	JLOC1_38332.1	1862	8e-25	1731 - 1790	100	60 / 60	plus
Harvest21	ABC19112	631	3e-25	545 - 604	100	60 / 60	plus	ABC19112
Harvest35	U35_9101	631	3e-25	545 - 604	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_9101 631 Hv_44K_v2
TCCTACCACCTGCACGGCTTCTGGGAGGAGATCGTCGGCCGGTACGAGGAGATGCGGAGC
AGGTGGCGGCCGGGGCTCGGCGACGAGCGGTGGCCGCTCGTGACGCACTTCGTCGGGTGC
AAGCCGTGCGGGGAGCCGGGCGCGACCTATGATGCCGTGGCGTGCCGGGAGGGCATGGAG
CGCGCGCTCAACTTCGCCGACGACCAGATACTCGGCCTCTACGGGTTCCAGCACGAGTCG
CTCGGAACCATGGCCGTGCGGCGCGTCAGGAACGACACCGGACGGCCGCTGGACGCCGGC
GACGAGGAGATCGGCTTGCTCCTGCACCCAGAGATCAGGGCCGCCGCCAACCAATTGTGA
TCAACTAGCTAGATCCTCCGGTTGCTTTGGGTGTCAACGTGCAGTGCGGACATACATCGG
AGAACGCAGCACTTCCTATTTTACACACAAGAATTTCTCTGTGACTTGGGGAGCATCTAT
GGCTCATGCTCTTCTTTTTTATTTTCGTTTCAATCGCTTTTCACCTGAACAGTATGATTT
ACATCCAACGATCAACTAGATCATCATCATGATGTATATATATGTGCTTTGCATTAACAC
GCATATTTGAATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_9101 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g19310.1	484	4e-55	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g64570.1	454	6e-59
Arabidopsis v10	None