barSeed - Barley Seed Development Database

Probe CUST_22601_PI390587928

Source Contig U35_9108

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22601_PI390587928	Hv_44K_v2	GTCACTGAAGAACCACATGATGACCACGAACATGAACACGAACACAAGCATGAACATGAA	979	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.632	0.784	1.983	2.208	0.885	0.714
Raw	104.871	203.579	454.184	794.110	114.026	99.327

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370773	1743	2e-24	981 - 1040	100	60 / 60	plus	ABC14905
MLOC	MLOC_10464.1	1225	7e-23	722 - 781	98	59 / 60	plus	ABC14905
MLOC	MLOC_10464.2	1507	7e-23	722 - 781	98	59 / 60	plus	ABC14905
JLOC1	JLOC1_6853.1	1585	4e-23	722 - 781	98	59 / 60	plus
Harvest21	ABC25501	795	3e-25	646 - 705	100	60 / 60	plus
Harvest35	U35_9108	1129	3e-25	980 - 1039	100	60 / 60	plus

Contig Sequence (1129 bp)

>U35_9108 1129 Hv_44K_v2
ACCCGCACCCGCACCATTGGTCTACTCCGTCCCACAATATCCACTGCGCTCCCCCGCCCG
CTCCCTCGCCCGCAGTCCGCAGCCCATGGCGGCGCTATGCTCCGCCGCCTCGCCGGCCGT
CTCCAGGGCCGCGGCGCTCGGCCTGTCCGCGCGCGGGCCCGCCTCCCTCCTCCCCTTCCG
CCTGCGCCTCCGCGCCGCCCCGCGCTCCTGCTACACCGCGCCGCGGGCTGGGAGGGTCGC
GCCGTCGTGGCGGGCGCACCGGCGCTTCGCCGCGTCGGCCGCCTCCGCCACGGAGGAGGG
CGCGGACGTCGACACGGAGATCCCGCCTGACAACCGCATCCCCGCCACCATCATCACCGG
CTTCCTCGGCTCCGGCAAGACAACTTTACTAAATCACATACTGACATCTCACCATGGAAA
ACGGATCGCTGTCATTGAGAATGAGTATGGTGAAGTTGACATCGATGGTTCATTGGTTGC
CGCACAAACTGCTGGAGCTGAGGACATAATGATGCTGAACAATGGTTGCCTTTGCTGCAC
TGTGCGTGGTGATTTAGTACGAATGATTGGTGAATTGGTTGACAAGAAGAAGGGAAAGTT
TGACCATCTTGTCATTGAAACCACAGGTTTAGCAAACCCAGCACCCATAATACAGACATT
CTACGCAGAAGATGCAGTTTTTAATGATGTCAAGCTGGATGGTGTTGTTACTTTAGTGGA
TTCAAAGCATGCAAGGTTGCATTTGGATGAAGTGAAGCCCAAGGGTATAGTCAATGAGGC
AGTTCAGCAAATTGCTTATGCTGACAGAATTATAATTAACAAGACTGACCTTGTTAGTGA
GCCTGAAGTTTCTTCCTTGGTTGAGCGTATAAGGAGTATCAATCGCATGGCTAATTTGAA
ACGAGCTCAGTATGGTAAAGTTGATTTGGATTATGTGCTTGGAATTGGAGGCTTTGATTT
GGAGAGGATTGAGAGTGCTGTCACTGAAGAACCACATGATGACCACGAACATGAACACGA
ACACAAGCATGAACATGAACATCACCATGACCATGACCACGACCATGATCACCATCATCA
TGATCATGACCATAAACATGACCATCATGCGCATGATCACACCCATGAT

Homology of Contig U35_9108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55630.1	448	2e-149	protein\|COBW domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g54350.1	441	9e-161
Arabidopsis v10	AT1G15730.1	448	2e-135	Cobalamin biosynthesis CobW-like protein \| chr1:5407535-5409937 REVERSE LENGTH=448