- Probe CUST_225_PI415269222
- Source Contig TA35850_4513
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_225_PI415269222 | Hv_44K_v2 | CAAAGAAGAACTAATGGAGTGGGCGTTCACAATTATCAATCTATTTAGGCTGCCTCGCGA | 2303 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.172 | 3.866 | 1.273 | 0.854 | 0.600 | 0.925 |
| Raw | 27.786 | 81.965 | 21.381 | 21.416 | 5.054 | 9.593 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_22159.2 | 2127 | 8e-25 | 1883 - 1942 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22159.1 | 2728 | 8e-25 | 2484 - 2543 | 100 | 60 / 60 | plus |
Contig Sequence (2375 bp)
>TA35850_4513 2375 Hv_44K_v2 CCACCCAGCCTCCCTCCGATCCGGGCTCCCCACCCCACCGCCAGCAAGCCACAGCACTCC CCCCCAGCAGCCGGGCGTACGCCTTCTCCATGCGCTGATCGACCGCCGGAGACCCCCCGC GCGCGCGAGCGAGCCAACCGAAAAAGGAGAGCCCCCGGCGGCGGACGTCGTCCGAGAGGG GAGCCGGCCACCATGCACTCCCAGAACCACTGGGGCGGGACTTTCGACATCGATGGCGCG GAGGACGACCAGAGCCGCAACATGGACATCGACCGCGGCGCGCTGCAGCACCAGCACCAG CTGGACGAGACGCAGCAGAGCTGGCTGCTCGGCCCGCCGGAGGCCAAGAAGAAGGACCGC TACGTCGACCTCGGCTGCGTCGTCGTCAAGCGCAAGCTGCTCTGGTGGATGCTCTGGGCC GTCCTCGGCGCCTTCGTCCTCATCGGCGTCCCCATCATCATCGCCAAGAACATCCCCAAG AAGAAGCACCACGCCCCGCCCCCCGACAAGTACACCGACGCGCTCCACAAGGCCCTCCTC TTCTTCAACGCCCAGAAATCCGGCAAGCTTCCTAAGAACAACGGCATCCCGTGGCGCGGG AACTCGGGCATGAAGGACGGCGCCGACCTGCCGGACGTGAAGGGCGGCCTCGTGGGCGGC TACTACGACGCCGGAGACAACATCAAGTTCCACTTCCCGATGGCCTTCTCCATGACGCTG CTGAGCTGGTCGGTGGTGGAGTACGCCGACAGGTACAAGGCGATCGGGGAGTACGACCAC GTGAGGGAGCTCATCAAGTGGGGAACCGACTACCTGCTCCTCACCTTCAACTCCTCCGCC TCCACCATCAACAAACTCTACAGTCAGGTGGGCACTGCCAAGATCAACGGCAGCACGCCG GACGACCACTACTGCTGGAACCGGCCGGAGGACATGGCGTACCCGCGGCCCGTGCAGCAG GCGAGCGCGGCCCCGGACCTGGGAGGCGAGGTGGCGGCGGCGCTGGCGTCGGCGTCCATC GTGTTCCGCGACAACGCCGCCTACTCCAAGAAGCTGGTGAGAGGCGCGGCGACGGTGTAC AAGTTCGCGCGCGCCAACGGCAAGCGCACCCCCTACTCCCGGGGCAATCCGGCCATCGAG TACTACTACAACTCCACCAGCTACTGGGACGAGTTCATGTGGAGCGCCTCCTGGATGTAC TACGCCACCGGCAACAACAGCTACATCAGCTTCGCCACCGACCCCAGGCTCCCCAAGAAC GCCAAGGCCTACTTCAACATCCTCGACTTCTCCGTCTTCAGCTGGGACAACAAGCTCCCC GGCGCCACCCTGCTGCTGTCGCGGCTGCGCATGTTCCTCAACCCCGGCTACCCCTACGAG GAGTCGCTCATGGGATACCACAACGTCACCAGCATGAACATGTGCATGTATTTCCCCAAG TTCAACGCGTTCAACTTCACCAAGGGCGGGCTCGCCCAGTTCAACCACGGCCAGGGCCAG GCGCTGCAGTACGCCGTCGCCAACTCCTTCCTCGCCGCGCTTTATGCCGACTACATGGAG TCCGTCAACGTCCCCGGCTGGTACTGCGGCCCCAACTTCATGACCGTCGACGACCTCCGC TCCTTCGCCAAATCTCAGCTGAACTACATCCTTGGGGATAACCCGATGAAGATGAGCTAC GTGGTGGGGTACGGCAAGAAGTACCCGAAGCGGCTGCACCACCGTGGGGCGTCGACGCCC AAGAACGGGATCAAGTACTCGTGCACCGGCGGCAACAAGTGGCGCGATTCCAAGAAGGCA GACCCTCACGTGCTCACGGGCGCCATGGTCGGCGGCCCGGACAAGAACGACAAGTTCAAG GACGCCAGGATCAGCTACGCGCAGAACGAGCCCACGCTGGTCGGCAACGCCGGGCTCGTC GCCGCGCTGGTCGCCATCACCAACAGCGGCCGCGGCACGGGGGTCGGCGCCGTCGACAAG AACACCATGTTCTCCGCCGTGCCGCCCATGTTCCCGGCCGCCCCGCCGCCGCCGGCCACG TGGAAGCCGTGAGGAGAGGTCTGCCTGGCCGGCCGGTTTTACGCCGGTGTTGAGCAGATC CATCAGATGGGTTTCTTCGATCAGGTTCGGTTGGTAGTGCAATTTTCTGGCCATCATGTA AAATTCTTTTGTATTATACACACGTTAACCGTGGCACGCGAACGACGGTGGCATGCATGA TGCATCACGCATGGCCTGTACTACTGTAGATGTTTCTTGTGCACAATCTGGGTATGGACA ATTAATGGATACGTGTTGATTCCCAAAGAAGAACTAATGGAGTGGGCGTTCACAATTATC AATCTATTTAGGCTGCCTCGCGAGCCGTTAGTTTC
Homology of Contig TA35850_4513 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g41970.1 | 624 | 0.0 | protein|endoglucanase, putative, expressed |
| Brachypodium v1_2 | Bradi5g14580.1 | 623 | 0.0 | |
| Arabidopsis v10 | AT5G49720.1 | 621 | 0.0 | | Symbols: ATGH9A1, TSD1, DEC, KOR, RSW2, IRX2, KOR1, GH9A1 | glycosyl hydrolase 9A1 | chr5:20197765-20200168 REVERSE LENGTH=621 |