barSeed - Barley Seed Development Database

Probe CUST_22589_PI390587928

Source Contig U35_9121

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22589_PI390587928	Hv_44K_v2	GTATTAGGATCAGCAACAACAACACGGAGGTCCACTCCGCCAACTCGACGTCCTCCGACA	448	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367368	2518	2e-24	607 - 666	100	60 / 60	plus	ABC19086 ABC29898
MLOC	MLOC_35840.1	416	2e-24	201 - 260	100	60 / 60	plus	None
JLOC1	JLOC1_23094.1	416	8e-25	201 - 260	100	60 / 60	plus
Harvest35	U35_9121	856	3e-25	449 - 508	100	60 / 60	plus

Contig Sequence (856 bp)

>U35_9121 856 Hv_44K_v2
ATCTCGGCCCCCTCTTGCCTTTTACTACAGCCCACCGAGCCTCCTGCGCCCGTACCCGAG
CCCGTTCCCGGGAAAGATAACGAGGAAGGAGGACGGACGGTGGAGGGAAAGCGCGGCGCG
CAACCGGAGCACGGCCCGTCTTCGCGGACCGCCGGCCGCGCGGGCGGATCGGCGAGTTGG
TGGCCGTTTGGATTGCAGGGTCGTGCCCGTGCTCGTGGTCGTGCCCGTGCCATGAAGAAG
AAAGACGCGGGAGGAGGCGGCGGTGGCGGTGGAGCGTTCGTGGCCGTCCCGTGCGTGGAC
ATGAAGCTCTTCGTCGCCTCGCTCGCCTTCCTCACGCTCTTCGTCGCATTGTGGCAGCTC
CAGCCCTACGGCACCCTCCTCGCCGCCGCACGCTCCTCCGCCTCCGCGCCGCCCTGCGCC
CTCCCACTCGCCACAACCTCCGCCGCCGGTATTAGGATCAGCAACAACAACACGGAGGTC
CACTCCGCCAACTCGACGTCCTCCGACACGGCCACAAAAAGCACACCGGGGACGACGTCG
GCTCCGGACACCCCCGCCGTCGGCACTGTTCCGATGCGGCTGGCGAGGCCGGCGACGCGG
CCGGAGGATCCGAACATGCCTGTGCTCACTCGGCCGCACGAAAGCGCGGCGGCGCGGACC
GAGGACCCAACCAAGCCGGTGCTCACTCGGCCGCACGAAAGCGCGGCGGCGCACGCGAAG
GAGCCGAACAAACCGGTGTTCCTTCGGCCGCATGTAAGCGCGGTGGCGCGGGCGGAGGAG
CCGAAAAGGCCGGTGCCCCGGCCGTCCGGCAACGCGGTGGCACGGGTGGAGGAGCCGAAA
AGGCTGGTGCCCCGGC

Homology of Contig U35_9121 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None