barSeed - Barley Seed Development Database

Probe CUST_22584_PI390587928

Source Contig U35_9127

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22584_PI390587928	Hv_44K_v2	ATATGGCTGGTATGGATACTGAACATCAGCTTGGTTTATTGCCACACCAGATGCGAGGAT	881	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.010	0.991	1.595	1.316	0.635	0.548
Raw	24.910	34.179	53.117	66.785	11.721	11.020

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20377.5	2159	2e-24	743 - 802	100	60 / 60	plus	ABC15306
MLOC	MLOC_20377.3	3290	2e-24	1768 - 1827	100	60 / 60	plus	ABC15306
JLOC1	JLOC1_14116.6	3687	8e-25	2145 - 2204	100	60 / 60	plus
JLOC1	JLOC1_14116.4	3273	8e-25	1731 - 1790	100	60 / 60	plus
JLOC1	JLOC1_14116.3	3303	8e-25	1761 - 1820	100	60 / 60	plus
JLOC1	JLOC1_14116.1	3657	8e-25	2115 - 2174	100	60 / 60	plus
Harvest21	ABC19585	945	3e-25	882 - 941	100	60 / 60	plus
Harvest35	U35_9127	945	3e-25	882 - 941	100	60 / 60	plus

Contig Sequence (945 bp)

>U35_9127 945 Hv_44K_v2
GAACTATATTAACATATACAACACCAAATTAATTTCACTATATTCAGCATAAAATATATT
TTCATACTATTATTAGCATGTATTTCTATACTTGGTTTAATTGAAAAGAAGACTTAGGAC
AAAGCTCGAACTTCAAGTAATTTGTAATGGAGTAGTATGCAGTTACATAATTCCCTTCTA
ACAAACTTAAATAAAATCTACACTTACACATATCCTTTGTATCTCTTTATTCATGATGGA
ACTAAACTTTCAGACCTGGGGTGTACGGAAACTAACTGTGGTTGACGGTGGTCATGTTTC
AATGTCTGATGTACTCAAACAATCACTGTACGTAGATAAGGATTGTGGTGTCCCAAGAGC
CACTGCAATAGTTCCACATCTAAAAGAGAGATGTCCTGCAGTGGACGTTGAAGCCATCCA
GATGGAAATACCAACGCCTGGGAATCCGGTTTCTACAAGTGTGCTTGATGATTGTGAGCG
TCTTCAAACATTAGTAGCTTCTAGTAATGTGGTCTTCTTGTTGACTGACACATGGGAGAG
CAGATGGTTTCCAACTCTTTTGTGTGCAAACGAAAACAAGATGGCCATCACTGCAGCATT
AGGGTATGACAGTTACTTTGTCATGCGACATGGTGCTGGCCCCGGAACTAGAAGTGGAAG
TATGGATGACATGATTGCTCAGATACAGAATTTATCCGCTGAAGATGCTCTCGGTCGTCA
AAGATTGGGGTGCTGTTTCTGCAGCGATACGACTTCCCTTGTCAATTCAGTCTCTGATGA
AACAGTAGCACTACCTGAGCTGACCTCCATCGTATCCGGCAAAACAGTGGAGCTCTTTGC
GAGGATGTTACATCATCCAGAGGGGATACATGCTCCAGGAGATATGGCTGGTATGGATAC
TGAACATCAGCTTGGTTTATTGCCACACCAGATGCGAGGATCACT

Homology of Contig U35_9127 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42850.2	1042	4e-110	protein\|ThiF family domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g43480.1	1033	1e-124
Arabidopsis v10	AT5G45900.1	697	7e-59	\| Symbols: APG7, ATAPG7, ATG7, ATATG7 \| ThiF family protein \| chr5:18615304-18618436 FORWARD LENGTH=697