- Probe CUST_22582_PI390587928
- Source Contig U35_9129
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22582_PI390587928 | Hv_44K_v2 | GGAGATCTTGGATGATGACTTGGTCGAAATGAACTACGAGCAAATGCTGAAAGACATACA | 424 | GeneList: ivory MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.065 | 1.160 | 1.634 | 1.202 | 0.656 | 0.499 |
| Raw | 37.033 | 55.956 | 77.925 | 86.300 | 16.942 | 14.510 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54940.2 | 5678 | 2e-24 | 4346 - 4405 | 100 | 60 / 60 | plus | ABC15671 |
| MLOC | MLOC_54940.1 | 6168 | 2e-24 | 4836 - 4895 | 100 | 60 / 60 | plus | ABC15671 |
| JLOC1 | JLOC1_35397.1 | 5952 | 8e-25 | 4653 - 4712 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19998 | 496 | 3e-25 | 425 - 484 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9129 | 497 | 3e-25 | 425 - 484 | 100 | 60 / 60 | plus |
Contig Sequence (497 bp)
>U35_9129 497 Hv_44K_v2 AAGATATCACCCGAAGGAACTCGTATGTGGACGAGCTGAAAGACAAACTAAATGCTGTGG AGATTGAGAACAGAAGACTGAAGGTCGATCTGAATGGCGACGTCACGATGTTAGGATCAT TGCAGACCGAAGTCAGTGCCCTGGAGAAACAAACCGTGTCCCTTGCTAATGATTTCTTGC AATCAAATAAACTCAAAGTGGAGGAAAATGCATCATCTTCTCAGCCTCTGGAAACCATAG TGGGATCCAGTGATCAGAATGCAAATGAAACAGTGAAAGACATGGAGCTGCAAAAGTTGC GTGGAACAATCAAAAGGCTCCAGAATGTGGTCGCGGATGCAAGCGCCCTTCTCGAGCAAG AGAGGCTTGGTTTCAATGCCAATCTGCAAGAAGCGAGGAAGCAGATTGAGGCGCTGAAGC TTAAGGAGATCTTGGATGATGACTTGGTCGAAATGAACTACGAGCAAATGCTGAAAGACA TACAGCTNGATCTCATC
Homology of Contig U35_9129 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g43684.1 | 1536 | 4e-77 | protein|KIP1, putative, expressed |
| Brachypodium v1_2 | Bradi4g23910.1 | 1532 | 2e-76 | |
| Arabidopsis v10 | None |