barSeed - Barley Seed Development Database

Probe CUST_22571_PI390587928

Source Contig U35_9143

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22571_PI390587928	Hv_44K_v2	CTCCCTGTATATATTCCGGGAAAAGTTCAAAGTTCTGATTCATATGTGGGATTACTCTTG	648	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.348	6.704	1.429	0.546	0.201	0.373
Raw	445.073	713.930	134.003	85.609	10.705	21.650

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21155.1	2007	2e-24	121 - 180	100	60 / 60	minus	ABC20056
MLOC	MLOC_21155.2	1643	2e-24	112 - 171	100	60 / 60	minus	ABC20056
JLOC1	JLOC1_14677.1	1464	8e-25	1275 - 1334	100	60 / 60	plus
Harvest21	ABC20056	731	3e-25	649 - 708	100	60 / 60	plus	ABC20056
Harvest35	U35_9143	731	3e-25	649 - 708	100	60 / 60	plus

Contig Sequence (731 bp)

>U35_9143 731 Hv_44K_v2
CGGCCACCGGGAGCCTGGTCCTGGCGAGGCCGCATCAAAAGGCGGCGACGACGTGGCGAC
GGCGGCGTGTCAGGGTCAGGGCGCGGACGCCAGCGAGGAGGAAAGGGTGTGGCTGGAGAT
GTACCAGGTGGGGCAGTGGGGGTTCGGCCGCTTGTCCTTCTCTGTGAACCCGCCTCCGAG
GGCCGGCCGCAACGCCGACGGCGACGGCTGCGAAAGCGACGTGTGAGATGGCCACCGCAC
CGACACCGTCCGTCCGCACCGGCGATGCTTTTTCCGTACCGTCTGTCCATGTCGCCGCGG
CGGCGACAAACCAACAGAATTCCATCGTGCTGGCTGGCCGGCATTCGAATTTCTCCGGCC
AAAAGCTTCGGGGGAGCAGAGCACCGAGAAATGCTTTCCATGGCTCGCCGATTTCCAGCA
GATGATCCAACGCAAAATTTGTTGGGGATGATCAGGAGAAGCGGCAGCATGGCGTCTTGC
TCGCCGTGCCCACAACTAGAACAGCTCCATGCACAATGGTTGGCTCCTGCCTTGTCAAGT
GTTCATTCTTTCTTCTGTGTCTATGGGGGTTTGGGGAGCTCGATTTGTACTCATGAGCTG
TACATAATTTGTGCCTTGGAGGTCTAGATTTTGCCATTTGGGAATCCCCTCCCTGTATAT
ATTCCGGGAAAAGTTCAAAGTTCTGATTCATATGTGGGATTACTCTTGTTAATTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_9143 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None