barSeed - Barley Seed Development Database

Probe CUST_22568_PI390587928

Source Contig U35_9146

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22568_PI390587928	Hv_44K_v2	ATGATTTAGCTGGTCAAATTTGGGAAGTGGTCAGGAAGGTCGGGAAGCACCATAACTTTA	541	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.531	1.804	1.254	0.640	0.444	0.626
Raw	262.023	261.417	178.058	128.075	33.601	53.223

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371682	2496	2e-24	461 - 520	100	60 / 60	plus	ABC14943
MLOC	MLOC_54563.1	3827	2e-24	2980 - 3039	100	60 / 60	plus	None
MLOC	MLOC_54563.2	3998	2e-24	2980 - 3039	100	60 / 60	plus	None
JLOC1	JLOC1_35121.2	1898	8e-25	71 - 130	100	60 / 60	plus
JLOC1	JLOC1_35121.1	2180	8e-25	216 - 275	100	60 / 60	plus
Harvest21	ABC21111	601	3e-25	542 - 601	100	60 / 60	plus
Harvest35	U35_9146	601	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (601 bp)

>U35_9146 601 Hv_44K_v2
AAAGTCGCCAGCCTTCTAGAACGTTCCACATCACTTTCCGCAAAACCCTAAACCCAGCAC
CACCCAGCCGGAACCATGCGCCGGCCGCAGCGCCGCGCTATGGCTAAGCAAAGCCGCGCC
AAGGACGGCGACGAGATCCGCCTCCTTGAGACCTGGATCGACGCAGGCAAGCCCCTCCCG
GGAACCAAGCCGCCTCCCCCCTCTGAGGACTCCTCCGCCGCCAACGCACGGGGAAGGGCA
CGAGTTGTAGTGGCTAAGGCGGCGGCCGGGGAGTACTCGGATTATGGCGCGTCCACGCGA
TTCGATGAGCTACCGCTGTCGACGAAGACCAAGGACGCCCTGCGGCAGCAGGGGTACAAG
GAGATGAGCGAGATCCAGCGGGCCGCCCTGCCCCACGCGTTATGCGGGCGCGATGTCCTC
GGCGCGGCCAAGACCGGGTCCGGCAAGACCCTCGCCTTCGTCATCCCAGTCATTGAGAAG
CTGTATCGGGAGAAATGGAGTCAAGAAGATGGTGTGGGTTGCATTATTCTCTCTCCCACT
AATGATTTAGCTGGTCAAATTTGGGAAGTGGTCAGGAAGGTCGGGAAGCACCATAACTTT
A

Homology of Contig U35_9146 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g33340.1	773	7e-63	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g26197.1	765	1e-71
Arabidopsis v10	None