barSeed - Barley Seed Development Database

Probe CUST_22565_PI390587928

Source Contig U35_9149

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22565_PI390587928	Hv_44K_v2	TGCGAGTAGTACTTGCAGCTAGATTCCTTTAGATGATACCGAACATTACAAGCCTTTTTT	508	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75857.1	1826	2e-24	1411 - 1470	100	60 / 60	plus	ABC24721 ABC24749 ABC25202
MLOC	MLOC_75857.2	1429	2e-24	1289 - 1348	100	60 / 60	plus	ABC24721 ABC24749 ABC25202
JLOC1	JLOC1_50597.1	1498	8e-25	1267 - 1326	100	60 / 60	plus
Harvest21	ABC24721	593	3e-25	27 - 86	100	60 / 60	minus	ABC24721
Harvest35	U35_9149	594	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (594 bp)

>U35_9149 594 Hv_44K_v2
TGCCCTGTCGGCCCAATTATCCCTGCGCACGAGGCCATGGAGGACTGCACGGTGGGTGGC
TTTCATGTCCAGCGCGGCACGATGATCCTCGTGAACGCATGGGCGATCCACCGGGACGCC
AAGATATGGGATGCGCCAGAGGAGTTCAGGCCGGAGCGCTTCATGGATAGAGACACGGTC
ACCACGCCCATGCTGCCGTTCGGGTTTGGTCGGAGGCGATGCCCCGGGGAGGGGCTGGCG
ATGCGCCTTGTTAGCTTGACTGTGGCAGCACTCGTGCAGTGCTTTGAGTGGGATGCTGGT
GAGGGCGACACCATCGACATGGCCGAAGGTGGCGGGCTGACAATGCCAATGGCGTCGCCG
TTGGTGACTGTCTGCCGGCCCCGGGAGTTTGTCAAGGGTGTGCTCTCTGCTTCCACTTGG
TGACTGACTGCGGACAGGTTTCTGAAGAAAAAGGGCATAAATCTGAATTAAAAATGTTTA
GCAGTGGTGCAGTGGTGCCAGTGATCGTTGCGAGTAGTACTTGCAGCTAGATTCCTTTAG
ATGATACCGAACATTACAAGCCTTTTTTTTAGCCTCTACTGAGTANACAAGTTG

Homology of Contig U35_9149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g39300.1	509	7e-69	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi3g18210.1	514	3e-67
Arabidopsis v10	None