barSeed - Barley Seed Development Database

Probe CUST_22563_PI390587928

Source Contig U35_9151

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22563_PI390587928	Hv_44K_v2	ATATGCAATGATTGATTGGTTCAAGAGCCAGGTGGAACAAGCTGGACTCGACAATCTGAG	623	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.344	0.672	1.239	1.929	0.975	0.888
Raw	10.021	27.645	49.144	114.174	21.148	21.829

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361466	1075	2e-24	617 - 676	100	60 / 60	plus	None
MLOC	MLOC_26659.1	887	2e-24	33 - 92	100	60 / 60	minus	None
MLOC	MLOC_26659.3	720	2e-24	2 - 61	100	60 / 60	minus	None
MLOC	MLOC_26659.2	806	2e-24	33 - 92	100	60 / 60	minus	None
JLOC1	JLOC1_18098.2	885	8e-25	711 - 770	100	60 / 60	plus
JLOC1	JLOC1_18098.1	912	8e-25	626 - 685	100	60 / 60	plus
Harvest21	ABC20875	703	3e-25	624 - 683	100	60 / 60	plus
Harvest35	U35_9151	703	3e-25	624 - 683	100	60 / 60	plus

Contig Sequence (703 bp)

>U35_9151 703 Hv_44K_v2
TCCCCCGGGCTGCAGAATTCGACGAGGACATCCTCCGCCATGGCTCTCCTGGTCCGTGCA
CCGCCGCTTCTTCTCCACCTACAGCCTCCCCCCACCACCGCGCAAGCTTTATTCGTCCGG
CAAATCGCACCCACACCCCGCCGCCGTTCCCTCTCCGCCCGCGTCCGCGTGCGCGCCTCC
AACTCCGACCCTCCGCAGCAGGTCAACCTCTCCGTCCTCCGCTTCACCCTCGGGATCCCC
GGGCTGGACGAGTCGTACCTCCCGCGGTGGATAGGCCTCGGCTTCGGCGCCCTCGTCCTC
CTCAACCACCTCCTCTCGCCGTCCCCAACTCCCGCGCAGCTCAGGTCGGAGGCTCTGGGG
CTGTGCCTGGCCGCGTTCTCAGCGGCGCTGCCGTACCTCGGGCGCTTCCTAGAGGGTGCT
GGTGCTTCCAGCCGTGTGCCGTTGCCAGAAGGGAGCAGGCAGGTGTTTGTGATTCCTGAT
GATCTGTCAACGGCGCAGAAAGAGGATATGGCCTGGGCGACATATGTTCTGCTTCAGAAC
ACAAACACCACATCAGTGCTCATAGCAATTGGCGATGTGTTGTGCATCCGAGGATACTGG
GATCCTCCTGCAGACATCTCCAAATATGCAATGATTGATTGGTTCAAGAGCCAGGTGGAA
CAAGCTGGACTCGACAATCTGAGCAGCGTTTTGTACTTTCCTA

Homology of Contig U35_9151 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g37840.3	241	2e-102	protein\|CCB2, putative, expressed
Brachypodium v1_2	Bradi3g31527.1	290	2e-112
Arabidopsis v10	AT5G52110.1	275	2e-64	\| Symbols: HCF208, CCB2 \| Protein of unknown function (DUF2930) \| chr5:21172653-21173953 REVERSE LENGTH=275