barSeed - Barley Seed Development Database

Probe CUST_22561_PI390587928

Source Contig U35_9153

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22561_PI390587928	Hv_44K_v2	GATGATTTGGTTCTAAAACTTGCAAAGTGACCCTATTTAGTCCCAAAACTTACAACTCAA	579	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.657	1.655	1.304	0.854	0.259	0.214
Raw	683.276	1116.929	748.651	782.835	83.060	74.186

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15909.1	1050	6e-24	905 - 963	100	59 / 59	plus	ABC18633
JLOC1	JLOC1_10938.1	926	3e-24	791 - 849	100	59 / 59	plus
Harvest21	ABC18633	653	3e-25	15 - 74	100	60 / 60	minus	ABC18633
Harvest35	U35_9153	653	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_9153 653 Hv_44K_v2
GCACGAGGGCCTCCTCAGGTCGGCAGCCGCCTGAGCCACGGGTGCGTCCGCAACTGACGA
CCAGGACGAGGCCGACCTCGTTGCCCTCTCCTCCTCTCCTTTCCCCTGTTTCTATTATCC
CCGCCTCAAGATCTTGCTCTTCTTCCTTCAAGCAGGCAGGAAGGCCATGGTCTCGTGGAC
TTGGCCCGCGCACAGCCGTTCGTTGCCGTGAAGACCCAGGCCCCGTCGCTCCTGCGGGTC
CTTCATCGGAACCGTGCCGAGCTGATGTTCCGTGCAACGCCATGAGCCGCCTACAGACCT
TCTGCCGCGCGCATCCTCGCCCGTCTCAACCATCCTCACTTCGAATCGGAGCTCCCTTCC
TTGGGGAATGGGTGTCCTGCCTCCGGATGTGGCGGATCCCCCGCTTCCCCGCCGTCGCCC
GTCGCCGACAGCCGTGCGCCCAGGACCTCCCCAACGAGCATCTTCGCCGCATTTGTCCGC
TCCTCTATTGGGCCCGTGCACTCGTGGAGTAGAAGACCCGCTGCTATATTAGAATTATGA
GGTAATAGCACACCAGGTCCTAGAACTTGCACTGGATGTGATGATTTGGTTCTAAAACTT
GCAAAGTGACCCTATTTAGTCCCAAAACTTACAACTCAAAAAAAAAAAAAAAA

Homology of Contig U35_9153 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None