barSeed - Barley Seed Development Database

Probe CUST_22556_PI390587928

Source Contig U35_9159

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22556_PI390587928	Hv_44K_v2	TCTGACCTGTAAACATGATGCAGAGATTTTATATGGATGTGGTTCGTTATTTGTGCTTTT	649	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.710	2.099	1.127	0.734	0.330	0.302
Raw	4319.200	5282.677	2476.167	2558.632	398.416	405.826

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12178.2	1646	2e-24	1540 - 1599	100	60 / 60	plus	None
JLOC1	JLOC1_8161.1	2332	8e-25	2238 - 2297	100	60 / 60	plus
Harvest35	U35_9159	731	3e-25	650 - 709	100	60 / 60	plus

Contig Sequence (731 bp)

>U35_9159 731 Hv_44K_v2
TGATGGTGAAAACTTCAGAGGACGGGGAGTGGGCTTCGTGAACAATGGTAACAACTACCG
CGATGGCAATAATATGAGGAGTGATAACAGAAACCAGAATGAGTACTCAGGCCATGGTCG
AGGACCGCAGGGGAACAACGACTACCGCCAGAATGACTCCCGTCAGAACAGGAATGATTA
CCGTCAGGATGGGAACGGCTACCGCCTTAATGGAGATGACTACCGCCAGAACAGGGACGG
CTACCGGCAGAATGGAGATGACTACCGCCAGAACAGGGACGGCTACCGCCAGAACGGAGA
AGACTACCTCCAGAACAGGGACGGCTACCGCCAGAATGGGAATGGACACCATCAGCCACG
CCCTGTTCACAGTGGGATGGGGAATGTGAATGCGAGGTCTGGCCGCTTCAATGGCCCCAA
GCAAATAGCAGTTACCGCATAGAAGTTGTGTGCAATCCAGCAAAGTAGAAAACTGTAGAC
TGTTCGCCCATTGATACTGTTTCTCACCCCGTACTCCTTTAGGAATCTCTGAAATGATCC
GCATTCTCCCGCATCGTATTAGGCTAAGGAAAGTTCTGTTCAACATGATGATACCTCGTT
TAGGCTGGTGCCTCTTTTGTGGCTAGTTGCTGCCCGCATTTTGGAATGCTCTGACCTGTA
AACATGATGCAGAGATTTTATATGGATGTGGTTCGTTATTTGTGCTTTTTGAATCCAAAA
AAAAAAAAAAA

Homology of Contig U35_9159 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None