barSeed - Barley Seed Development Database

Probe CUST_22554_PI390587928

Source Contig U35_9161

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22554_PI390587928	Hv_44K_v2	CCACCGCGGGCCCGCTCCGGACCCTCTCCGCCCACACCGCCGAGACCCGCGTGGTCTGCT	450	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71601.1	2903	2e-24	2514 - 2573	100	60 / 60	minus	None
JLOC1	JLOC1_47600.1	2016	8e-25	1525 - 1584	100	60 / 60	minus
Harvest35	U35_9161	510	3e-25	451 - 510	100	60 / 60	plus

Contig Sequence (510 bp)

>U35_9161 510 Hv_44K_v2
TCGAGCACTGTTGGCCTAGGAAGCTAGGGTTTTTCTCTCCCGCCTGGCCGCCGCCCGTCC
GTCCACCCACCGCCGCCGCCATGGCCGCCGACACCTCGAAGCCGCTCTTCCCCGCCGCGC
CGCACACCTCCCTCCTCCCGTCCCACGGCAACCCCAACCGCCTCTCGCCGGAGGCCACCT
ACTGGCGCAACTTCCGCTCCTCAGAGCTCGAGACGAGCTCCACCTACTCCGTCACCCACC
TCGCCTTCTCCCCGGCGCACGCCAAGCCCACGCTCGCCGCGGCCTGGTCCTCCGCGGTGC
ACCTCTTCACCGGCGACCCCCTCGCGCCGCGCCCCAAGGTGACCGTCTCCAAGGACGACG
CCGCGTTCTCGCCCTCCTTCCGCTGCGACGGGGCGCTGCTCGCCGCCGGCGACAAGAAGG
GCGTCGTCCGCGTCTTCCGCGTCGACAAGCCCACCGCGGGCCCGCTCCGGACCCTCTCCG
CCCACACCGCCGAGACCCGCGTGGTCTGCT

Homology of Contig U35_9161 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g12320.1	534	1e-53	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g53790.1	532	6e-76
Arabidopsis v10	None