barSeed - Barley Seed Development Database

Probe CUST_22553_PI390587928

Source Contig U35_9163

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22553_PI390587928	Hv_44K_v2	TTGGGAACTAGTGGCATCATTCATCATTGGTACTTCACCACAGATTAGAGGATGTGCACT	619	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.213	0.970	1.734	1.208	0.693	0.405
Raw	19.748	20.549	39.260	40.254	7.899	4.782

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55536.1	6001	2e-24	1619 - 1678	100	60 / 60	minus	ABC14211 ABC38295
JLOC1	JLOC1_35838.2	6000	8e-25	4324 - 4383	100	60 / 60	plus
JLOC1	JLOC1_35838.1	5993	8e-25	4317 - 4376	100	60 / 60	plus
Harvest21	ABC21254	679	3e-25	620 - 679	100	60 / 60	plus
Harvest35	U35_9163	679	3e-25	620 - 679	100	60 / 60	plus

Contig Sequence (679 bp)

>U35_9163 679 Hv_44K_v2
GAACAGCGAAACTGGTAGTTAAGTTTGAACGTGAGATCAGCGATGCAGAAACATCATTAC
TCCTTACCCTGTTTTCGAGGTACCGGGCTTTCTATTCTAGCGCAGATCCGTCATTGTCCT
CTAGTGGAACTAGCCTGTCAAAAACTGCTGAACTTTTGGGAGTGAAACTAACAGCGGTTA
TGGTTGGTTATTGCTGTACAAAACTTGGTGAAGCTGATTGGTGCTTCGTGTTCCGTATTC
TACGAAAGTGGATTGAATCGTCTGTTTTACTTGTTGAAGAAATGACAGATGGCGTGAATG
ACGCTGTAATAAACCGTACATCCGCTGAGGATATTTTGGAGAAGCTTAAACTGATAGCTT
GCACCCCAGAGGAGCTAACATTTACTTTTGCTGAATCTGCTCTGGTTACATTGTGTTGCC
TCAACCATGTTGACAGTCTCCATGAATCCCAAACTCTGCAGCTTATTAGATCAGGGGAGT
ATGCAGAGAGTAACGACAAGATGATGGAGAATGTTCTCCGTTTGTTCTTGGCTTCTGGTG
TTTCAGAGGCAATTGCGGGATCTTGTAGTGAAGAGGCTTCATCCGTCATAGCTTCCGGCC
GTGTGGTTTATCTGCATTTTTGGGAACTAGTGGCATCATTCATCATTGGTACTTCACCAC
AGATTAGAGGATGTGCACT

Homology of Contig U35_9163 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g74610.1	1922	3e-77	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi2g62760.1	1923	3e-87
Arabidopsis v10	None