barSeed - Barley Seed Development Database

Probe CUST_22551_PI390587928

Source Contig U35_9165

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22551_PI390587928	Hv_44K_v2	ATGAAGAACGTCTTAATGACATTGCCACACAGATAGGGAATGCAGTTGGCAAACTACACG	402	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.544	0.749	1.270	1.807	0.845	1.192
Raw	141.747	311.037	453.477	1088.964	166.776	259.749

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16227.1	1173	2e-24	540 - 599	100	60 / 60	plus	None
JLOC1	JLOC1_11165.3	1172	8e-25	512 - 571	100	60 / 60	plus
Harvest21	ABC20251	525	3e-25	403 - 462	100	60 / 60	plus
Harvest35	U35_9165	525	3e-25	403 - 462	100	60 / 60	plus

Contig Sequence (525 bp)

>U35_9165 525 Hv_44K_v2
CCGGAGCAGCGCGTCATTGGCGGCGGAGGCCGTGTAAACCCATAAAGTTCTGTTTTAAGC
GCACATTGAACTTTATGGACATATCTCAGGAGCAACAACAAGATTTTGGTGTGCTACTAA
AGCAGGGGGCTGAAGGAAGGGTATTTGTTTCCACATTTGTTGGACGAAAATGCGTAATCA
AAGAGCGCTTTTCAAAGAAGTACCGACACCCATTGCTGGACTCAAAGCTGACTCTAAAGC
GCTTAAATGCTGAAGCTAGATGCATGACAAAAGCAAGACGGCTTGGTGTACCTACACCAG
TTCTGTATGCTGTGGACCCTCTTCCACATACATTAACCTTTGAGTATGTGGATGGCTTGT
GCGTCAAAGATATTCTTATTGGATTTGGGTCAAATGGGATAAATGAAGAACGTCTTAATG
ACATTGCCACACAGATAGGGAATGCAGTTGGCAAACTACACGACGGAGGTCTTGTTCATG
GTGATTTGACAACTTCAAATATGATGATCAAGAGCAGCACCAATC

Homology of Contig U35_9165 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g28640.1	660	2e-88	protein\|RIO1 family protein, expressed
Brachypodium v1_2	Bradi2g56690.1	677	7e-91
Arabidopsis v10	AT5G26110.1	226	4e-71	Protein kinase superfamily protein \| chr5:9118239-9119352 REVERSE LENGTH=226