barSeed - Barley Seed Development Database

Probe CUST_22548_PI390587928

Source Contig U35_9169

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22548_PI390587928	Hv_44K_v2	CGGTGTTCAATGTCTGAGCAAATGATCATGTGGATATATATGTAACTAATAGTTCGTCTA	514	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.350	3.758	1.245	0.862	0.230	0.311
Raw	212.913	208.140	60.005	72.529	5.291	8.554

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375453	1726	6e-24	1656 - 1714	100	59 / 59	plus	ABC19422
MLOC	MLOC_79210.1	845	6e-24	135 - 193	100	59 / 59	minus	ABC19422 ABC52599
JLOC1	JLOC1_52776.1	809	3e-24	99 - 157	100	59 / 59	minus
Harvest21	ABC19422	591	3e-25	515 - 574	100	60 / 60	plus	ABC19422
Harvest35	U35_9169	591	3e-25	515 - 574	100	60 / 60	plus

Contig Sequence (591 bp)

>U35_9169 591 Hv_44K_v2
GGCGACCAGCGGATCTGGGCGTGGGTGGCATTCCACCTGGAGAGCCCCAGCCGCTACTTC
AGGTTCGTCTACTGCAACGACATCGTGCCCCGGGTGCCCTACGACGACTCCACGCTCCTC
TTCAAGCACTTCGGGACATGCCTCTACTTCGACAGCTTCTACAGAGGACAGGTTACGGCG
GAGGAGCCCAACAAGAACTACTTCTCGGTGCTGGCGGTGGCGCCCAAGCTGGTGAACGCG
TGGTGGGAGCTCGCCCGGAGCTTCCTCATNGGCTACGCGGAGGGACCCGAGTACGCCGAG
GGGTGGCTGATGCGGCTGGCCAGGGTCGGCGCGCTGGTGATGCCGGGGCTGCCGCCGCAC
GCGCCGCAGGACTACGTCAACGCCACCAGGCTCGGGGCGGCGTCCCTCGGCCCGCTGGAG
CTGGCCGAGCAGCCAGTTTAACTTTATTTAGTGCATATACTAGAAGTTCAGAATCAGATT
AAACATATGTAAGTAGTCTGCATTGTTAATGTTCCGGTGTTCAATGTCTGAGCAAATGAT
CATGTGGATATATATGTAACTAATAGTTCGTCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_9169 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52830.1	483	7e-71	protein\|lipase, putative, expressed
Brachypodium v1_2	Bradi3g57950.1	477	7e-80
Arabidopsis v10	None