barSeed - Barley Seed Development Database

Probe CUST_22546_PI390587928

Source Contig U35_9171

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22546_PI390587928	Hv_44K_v2	ATCCTCACATATCCTAGTTTCTGCATGTAGTGTTACGGTCACCGAGATTGAAATGGAGGG	512	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.525	2.242	1.116	0.646	0.355	0.508
Raw	1045.732	1070.846	456.524	395.323	81.313	126.653

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55868.2	1563	2e-24	14 - 73	100	60 / 60	minus	ABC20105
MLOC	MLOC_55868.3	1559	2e-24	14 - 73	100	60 / 60	minus	ABC20105
MLOC	MLOC_55868.1	1542	7e-23	1467 - 1526	98	59 / 60	plus	ABC20105
JLOC1	JLOC1_36076.1	1494	8e-25	1382 - 1441	100	60 / 60	plus
Harvest21	ABC20105	604	3e-25	513 - 572	100	60 / 60	plus	ABC20105
Harvest35	U35_9171	604	3e-25	513 - 572	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_9171 604 Hv_44K_v2
TATGGATCGCAAGATTGAAATCCCTCTTCCTAACGAACAAGCGAGGCAGGAAATCCTCAA
GATCCATGCAGCTGCAATGGCCAAGCATGGCGAAATCGACTACGAAGCTGCTGCCAAGCT
AGCAGAGGGATTCAACGCCGCCGACATGCGCAACGTCTGCACAGAAGCTGGCATGGCGGC
GATCCGAGCAGAGCGTGACTACGCCATCAACGAAGACTTTATCAAGGGGGTGAGGAAGCT
CACGGACGTGAAGAAGCTGGAGTCCAGTGCCAACTACAAGGCAGACTTCAGCAAGGAGTA
GCGTGTCGACAGGGCGAGTTAACCAGCTGATGAACCTTTTGATGAAAGTTTAGATAAACA
TATATAGCAACCAATCCTTTTGAAAACGGTCCAGGATGCTATCGTAGTTCCTGTCCGCGA
AACTGATCCTTGCCCAGGCCTAATTTTGAGGAACCTCTTTTATGCACTTGTGATGCTCGC
GAGCTGCTGGTCTGAGATGAAACTGATCACTAATCCTCACATATCCTAGTTTCTGCATGT
AGTGTTACGGTCACCGAGATTGAAATGGAGGGGAGGGTTCTGGACTGAAAAAAAAAAAAA
AAAA

Homology of Contig U35_9171 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None