barSeed - Barley Seed Development Database

Probe CUST_22541_PI390587928

Source Contig U35_43740

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22541_PI390587928	Hv_44K_v2	GAGGCCATGTTCCTCATGTCGCTCGCGCTCGCTGCCGCGCACCTCGCCATGGCGTACCGG	243	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365681	2222	7e-23	591 - 650	98	59 / 60	plus	ABC02236 ABC26795
MLOC	MLOC_25228.1	107	7e-23	19 - 78	98	59 / 60	minus	None
Harvest21	ABC02236	913	3e-25	341 - 400	100	60 / 60	plus	ABC02236
Harvest21	ABC02237	695	1e-23	204 - 263	98	59 / 60	plus
Harvest35	U35_43740	303	3e-25	244 - 303	100	60 / 60	plus
Harvest35	U35_1410	1197	1e-23	333 - 392	98	59 / 60	plus

Contig Sequence (303 bp)

>U35_43740 303 Hv_44K_v2
CAGATCGCAACCGCCACCTCATACCCACCATCCCACCCATCCTCCGCTCGTCATGCTCTT
CCTCCGCTTGTCCGTCGCGCGTACATGGCGTGCGGGGGTGGCGCGTCCTATGTGTAGGTG
GCGGCGACGTGCAGGGTCGGCTCCCTCTTCTACTTCCTCGCCAAGGCCGTCGCGGTCTTC
GGCATCGCCGCCGCCGGCGCCGTCCGCCTTGACCTGCACGGCAAGGGCCAGGCCCTCGTC
GTCGAGGCCATGTTCCTCATGTCGCTCGCGCTCGCTGCCGCGCACCTCGCCATGGCGTAC
CGG

Homology of Contig U35_43740 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None