- Probe CUST_22537_PI390587928
- Source Contig U35_43742
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22537_PI390587928 | Hv_44K_v2 | ATCCTCTTCCACAGAGAACCGACGAGGAAAATGCCGCGCCACCTGCTGCAGCAGTCCGTC | 26 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.993 | 1.764 | 1.308 | 0.733 | 0.724 | 0.721 |
| Raw | 153.378 | 209.238 | 136.232 | 113.858 | 40.844 | 44.740 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_32712.1 | 677 | 2e-24 | 435 - 494 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_21289.1 | 518 | 8e-25 | 434 - 493 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC40780 | 326 | 3e-25 | 27 - 86 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43742 | 326 | 3e-25 | 27 - 86 | 100 | 60 / 60 | plus |
Contig Sequence (326 bp)
>U35_43742 326 Hv_44K_v2 CAGAGCTCCCACTCTGCTCTCATCTCATCCTCTTCCACAGAGAACCGACGAGGAAAATGC CGCGCCACCTGCTGCAGCAGTCCGTCGACCGCCTCGCCGCGCTGGCCGCGCCTCCGGCGG CCGCCATGGCTGGCGGCGGGACGAGCGTGCACACGGACACGCTGCTCATCCTGGCGTCGG TACTCTGCTTCCTGCTCTGCGTGGTCGGGCTGGCCATGGTGGCCCGCTGCTCCCGGCTGT GCAACCCCTCCGCCTTCTCCGTCGACGCGCCGGGGGCAGCCGCGGCGCCGTGCAAGGGGA TCAAGAAGAAGGCGCTGCAGTCGCTG
Homology of Contig U35_43742 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |