- Probe CUST_22536_PI390587928
- Source Contig U35_43743
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22536_PI390587928 | Hv_44K_v2 | ATATTTTACGAAATTGACTGGAATGCGACACAAGACCAGCAGGCAATGGATAGAACACAC | 259 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.297 | 1.207 | 1.153 | 0.770 | 0.449 | 0.434 |
| Raw | 457.649 | 633.569 | 549.824 | 551.963 | 116.794 | 125.172 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52203.4 | 4278 | 7e-23 | 3869 - 3928 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_52203.2 | 5269 | 7e-23 | 3994 - 4053 | 98 | 59 / 60 | plus | ABC09656 |
| MLOC | MLOC_52203.5 | 4692 | 7e-23 | 3742 - 3801 | 98 | 59 / 60 | plus | ABC09656 |
| MLOC | MLOC_52203.1 | 5501 | 7e-23 | 4226 - 4285 | 98 | 59 / 60 | plus | ABC09656 |
| JLOC1 | JLOC1_33421.3 | 5311 | 4e-23 | 3836 - 3895 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_33421.2 | 5286 | 4e-23 | 3811 - 3870 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_33421.1 | 5596 | 4e-23 | 4121 - 4180 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC40783 | 322 | 3e-25 | 260 - 319 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43743 | 322 | 3e-25 | 260 - 319 | 100 | 60 / 60 | plus |
Contig Sequence (322 bp)
>U35_43743 322 Hv_44K_v2 CAGAGATAAACTACTGCGGCAACTCCGAGCTGAAAATCACCGCGTGCTCCTATTTGCTCA GATGACTAAAATGTTGGACATCCTTGAGGACTACATGAATTTCAGGAAATTCAAGTATTT CAGACTGGATGGGTCTTCTGCAATTTCTGATCGTCGTGACATGGTCCGGAATTTCCAGAA CAGGAATGATATATTTGTCTTCTTGCTAAGTACAAGAGCAGGGGGACTTGGAATTAATTT GACTGCTGCTGACACAGTTATATTTTACGAAATTGACTGGAATGCGACACAAGACCAGCA GGCAATGGATAGAACACACAGA
Homology of Contig U35_43743 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g22900.1 | 1458 | 3e-61 | protein|SNF2 family N-terminal domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g62320.1 | 1495 | 6e-64 | |
| Arabidopsis v10 | AT3G57300.2 | 1540 | 4e-52 | | Symbols: INO80 | INO80 ortholog | chr3:21199612-21207635 FORWARD LENGTH=1540 |