barSeed - Barley Seed Development Database

Probe CUST_22533_PI390587928

Source Contig U35_29452

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22533_PI390587928	Hv_44K_v2	AACAGATTTCATGTACACACGCTGCGAACGGCGTCCGTTGCAGCGCTGGTTGTTTCGTCG	296	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365634	2527	2e-24	2437 - 2496	100	60 / 60	plus	None
MLOC	MLOC_54057.1	4589	7e-23	2074 - 2133	98	59 / 60	plus	ABC40385
MLOC	MLOC_54057.2	4509	7e-23	1994 - 2053	98	59 / 60	plus	ABC40385
MLOC	MLOC_54057.6	2652	7e-23	507 - 566	98	59 / 60	plus	None
MLOC	MLOC_54057.3	2145	7e-23	1985 - 2044	98	59 / 60	plus	None
MLOC	MLOC_54057.4	2212	7e-23	2052 - 2111	98	59 / 60	plus	None
MLOC	MLOC_54057.5	2219	7e-23	2062 - 2121	98	59 / 60	plus	None
JLOC1	JLOC1_34780.1	2145	4e-23	103 - 162	98	59 / 60	minus
JLOC1	JLOC1_34778.2	2133	4e-23	1972 - 2031	98	59 / 60	plus
JLOC1	JLOC1_34778.1	2139	4e-23	1978 - 2037	98	59 / 60	plus
Harvest21	ABC28737	373	3e-25	297 - 356	100	60 / 60	plus
Harvest35	U35_29452	373	3e-25	297 - 356	100	60 / 60	plus

Contig Sequence (373 bp)

>U35_29452 373 Hv_44K_v2
CTCCGACATCTCCCGCAGCAGCACGGTCGCAGGAGGATCGACTTCAGCGACGTCCTGGGT
CGTTTGGAGGAGCTTATCGACATGTTCAGCTCCGACAGGGAGCGAGCCTCGTCCGACTTT
GCTGACTTCAAGTCGAGCTTCTGTGGGTGCGCCGTGTACGACGATGCTCGCCGTGAGTTC
GAGGCGCTGCTCGTCATGTACAGGACGGCCCGGACGCGGTACGCCAAGGGCATGCTGGCG
TTGCACGGGAAGCACGGAGGGTAGCTAGCTGCTCCCGAGTTCCCCCATTTTTGCCGAACA
GATTTCATGTACACACGCTGCGAACGGCGTCCGTTGCAGCGCTGGTTGTTTCGTCGGTCG
TGCAACCTGGACT

Homology of Contig U35_29452 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None