- Probe CUST_22531_PI390587928
- Source Contig U35_43746
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22531_PI390587928 | Hv_44K_v2 | GTCAGACTCCCGGTAGGACCTGGTGCTCGTTGCAAATTATTTTGTGAACAATCTAAAAAA | 11 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.067 | 1.595 | 1.479 | 1.445 | 0.638 | 0.669 |
| Raw | 163.250 | 391.042 | 310.357 | 479.628 | 74.039 | 82.969 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_13598.3 | 2693 | 3e-21 | 2618 - 2671 | 100 | 54 / 54 | plus | ABC40789 ABC49979 |
| MLOC | MLOC_13598.4 | 1245 | 3e-21 | 1021 - 1074 | 100 | 54 / 54 | plus | ABC40789 ABC49979 |
| JLOC1 | JLOC1_9218.2 | 2348 | 2e-21 | 2192 - 2245 | 100 | 54 / 54 | plus | |
| JLOC1 | JLOC1_9218.1 | 2241 | 2e-21 | 2085 - 2138 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC40789 | 207 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC40789 |
| Harvest35 | U35_43746 | 207 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (207 bp)
>U35_43746 207 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGATTGTTCACAAAATAATTTGCAACGAGCACCAGGTCCTACC GGGAGTCTGACTAGCATGCGAATGAAATATTTACAAGGTCTGCCTCAGCCCTAGTCCCTT TGTAGGCTTGTAGCACAACAAACATAGAGATAGCATAGCGTGTTACAGAACACGCATGGA CACAGGACGGCCATACCACAATACTGG
Homology of Contig U35_43746 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |